Non-Coding RNA Search

Ss1.1-Liv1-LVR010010F10.5

Sequence:


               
               AGCAGCCAGAATTCTGTCTTCTTTAAGCTTCCTCTTTCTTCATCTATAAAATGTAATTTT
AGTCGTACCTGCATCATGGAGTTATGAGTGTAAAAATGAGATAATCCATATAATAGTACT
TAGCACAGGTCAGTATGTACTTAGGTCAATAAGTTTGAACTGTCCTGGTGGCATGAGGCA
GCGGTCAAGAGGAGATGAGGTATTTAAGATATCTTTAAGTAAAGCTTTTATGCTTTTGAT
CTTCCATTGCTGAATTTGTAAACCCTAACCCTGTTCCTTTAAAGCAGATGAAATTTCTTT
TTTTTTAGTATTTTCGTTCAAGGTTGGTCATACCACAGTTTTCCCTTAGATCTTCAGATA
ATCTTCTAACTTCTAATATTCACAAATAATCACATCTTTACTAGGTCTAAATACAATTCT
TGCTGAGACGGCATATAAATTACTCAGTGGTTAGTAGCAATTTTTTTTGTTTCCGTTGCT
TCTCTGCTTCTGCAAGCCCTAAGAAAAACTGTAGTCAGCTCTTTGTCAGTGTGTCCGCTA
CTTGTTGGGCAGATGAAACAGAAGGCATGTGATTGCATGAGCAGACAAGATTTACTTCCT
GTTATGGAGTAAGATCCTGTTTGCAAGCTCAGAACACTACATCTGGTTGATGCCACTTTA
ACCCTTTTAATCAGACCCTCTAAGCCTAGAAGTGGCTTCTTCAGGGTCTCATTTGTTCAT
CTGGCACCCACGGAGTGTGTGTTCTAACACGCTGTTCTGCTCTTTTCTTGGGTCACTAGG
ACCTACATAATTAGAGATAACTAAAATGACTCTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCCAGAATTCTGTCTTCTTTAAGCTTCCTCTTTCTTCATCTATAAAATGTAATTTT
AGTCGTACCTGCATCATGGAGTTATGAGTGTAAAAATGAGATAATCCATATAATAGTACT
TAGCACAGGTCAGTATGTACTTAGGTCAATAAGTTTGAACTGTCCTGGTGGCATGAGGCA
GCGGTCAAGAGGAGATGAGGTATTTAAGATATCTTTAAGTAAAGCTTTTATGCTTTTGAT
CTTCCATTGCTGAATTTGTAAACCCTAACCCTGTTCCTTTAAAGCAGATGAAATTTCTTT
TTTTTTAGTATTTTCGTTCAAGGTTGGTCATACCACAGTTTTCCCTTAGATCTTCAGATA
ATCTTCTAACTTCTAATATTCACAAATAATCACATCTTTACTAGGTCTAAATACAATTCT
TGCTGAGACGGCATATAAATTACTCAGTGGTTAGTAGCAATTTTTTTTGTTTCCGTTGCT
TCTCTGCTTCTGCAAGCCCTAAGAAAAACTGTAGTCAGCTCTTTGTCAGTGTGTCCGCTA
CTTGTTGGGCAGATGAAACAGAAGGCATGTGATTGCATGAGCAGACAAGATTTACTTCCT
GTTATGGAGTAAGATCCTGTTTGCAAGCTCAGAACACTACATCTGGTTGATGCCACTTTA
ACCCTTTTAATCAGACCCTCTAAGCCTAGAAGTGGCTTCTTCAGGGTCTCATTTGTTCAT
CTGGCACCCACGGAGTGTGTGTTCTAACACGCTGTTCTGCTCTTTTCTTGGGTCACTAGG
ACCTACATAATTAGAGATAACTAAAATGACTCTGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               517-671, + strand, RNAz p=0.920124

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               517-671, + strand, RNAz p=0.920124

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               25-816, gnl|bosTau2|chr16 (45450842-45450061)
               

               
               25-816, gnl|Hg17|chr1 (179496048-179496841)
               

               
               25-816, gnl|Mm7|chr1 (153504644-153503954)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-816, gnl|bosTau2|chr16 (45450842-45450061)
               

               
               25-816, gnl|Hg17|chr1 (179496048-179496841)
               

               
               25-816, gnl|Mm7|chr1 (153504644-153503954)

	25-816, gnl\|bosTau2\|chr16 (45450842-45450061)
	25-816, gnl\|Hg17\|chr1 (179496048-179496841)
	25-816, gnl\|Mm7\|chr1 (153504644-153503954)