Non-Coding RNA Search

Ss1.1-Liv1-LVR010010G04.5

Sequence:


               
               CGTTAGGGGGCGGGGCCTCCGCTAACCATGGCCGGCGAGCTGGAGGGCTCCAAACCCCTC
AGCGGGCTGCTGAGCGGCCTGGCCCAGGACGCTTTCCACGGGCACCCAGGCATCACAGAG
GAGCTGCTGCGGAGCCAGCTCTATCCAGAGATGCCACCTGAGGAGTTCCGCCCCTTTCTG
GCGAAGATGAGGGGGATCCTTAAGGTACCGTTCCTCCCTGCAGCCTCCGCCACGGAGTCC
TGCCTTGTCCCCGCCGCCCTCAGACTCGTCCCCCCAGAAGCTGAAAGGCTTCCCTCCTCA
GACCGCTACTGCTTATGTTGCACTTTACGCTCCTTCATATCCCAGGCGCTCGCCCTGTCG
CCTCCTCTCACTTAATGAGGGCTCCCCCCACCAGTGCCGACTGACAGCCGGGGAGAGGAC
TCAGGTTTTTTTCTCCATACAGTTATCTACCGTCGTGTAGGTCACGAACGATTTTGAGTT
GTCTTGGTAGATCTGTGCACTGCATACTTTTTAACATTAAGAGCGATCAGGCCATCAGTT
TTACCGGGTCATGGAAGTGTTTGAGTGTTAAACAAGCGAGCAAATGTATACCGGGACAAG
GGATGGATTAGTTGGGTGATCCCCTAAACTGCAGTCCACTGGTTGGTTAAGGGAGCACGT
CACCATCATGAAGTCAAAGCGTAGCTCAGCCTGTCCAACAGAAATGTAATGAGTGTGTTG
CAGAAATTTGATTTCTGTCTGTTGGTGCTGAATTGAAACGCAGAGACAGAGTTTTGGGTA
AAGGAGAAAAAGATTGCTTTATTGCTTTGCCAGGCAAAAGCCCCCTCCCTCCCCCAGCCA
GGGGTTTAGGTGGTTTTATAGTTTGGGGAGTGGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTTAGGGGGCGGGGCCTCCGCTAACCATGGCCGGCGAGCTGGAGGGCTCCAAACCCCTC
AGCGGGCTGCTGAGCGGCCTGGCCCAGGACGCTTTCCACGGGCACCCAGGCATCACAGAG
GAGCTGCTGCGGAGCCAGCTCTATCCAGAGATGCCACCTGAGGAGTTCCGCCCCTTTCTG
GCGAAGATGAGGGGGATCCTTAAGGTACCGTTCCTCCCTGCAGCCTCCGCCACGGAGTCC
TGCCTTGTCCCCGCCGCCCTCAGACTCGTCCCCCCAGAAGCTGAAAGGCTTCCCTCCTCA
GACCGCTACTGCTTATGTTGCACTTTACGCTCCTTCATATCCCAGGCGCTCGCCCTGTCG
CCTCCTCTCACTTAATGAGGGCTCCCCCCACCAGTGCCGACTGACAGCCGGGGAGAGGAC
TCAGGTTTTTTTCTCCATACAGTTATCTACCGTCGTGTAGGTCACGAACGATTTTGAGTT
GTCTTGGTAGATCTGTGCACTGCATACTTTTTAACATTAAGAGCGATCAGGCCATCAGTT
TTACCGGGTCATGGAAGTGTTTGAGTGTTAAACAAGCGAGCAAATGTATACCGGGACAAG
GGATGGATTAGTTGGGTGATCCCCTAAACTGCAGTCCACTGGTTGGTTAAGGGAGCACGT
CACCATCATGAAGTCAAAGCGTAGCTCAGCCTGTCCAACAGAAATGTAATGAGTGTGTTG
CAGAAATTTGATTTCTGTCTGTTGGTGCTGAATTGAAACGCAGAGACAGAGTTTTGGGTA
AAGGAGAAAAAGATTGCTTTATTGCTTTGCCAGGCAAAAGCCCCCTCCCTCCCCCAGCCA
GGGGTTTAGGTGGTTTTATAGTTTGGGGAGTGGAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q53QP8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53QP8_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               210-386, - strand, RNAz p=0.999771
               

               
               716-818, + strand, RNAz p=0.560881

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-386, - strand, RNAz p=0.999771
               

               
               716-818, + strand, RNAz p=0.560881

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-711, gnl|bosTau2|chr11 (40264870-40265557)
               

               
               14-711, gnl|Hg17|chr2 (62044451-62045155)
               


               
               716-818, gnl|bosTau2|chr1 (228662-228766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-711, gnl|bosTau2|chr11 (40264870-40265557)
               

               
               14-711, gnl|Hg17|chr2 (62044451-62045155)
               


               
               716-818, gnl|bosTau2|chr1 (228662-228766)

	210-386, - strand, RNAz p=0.999771
	716-818, + strand, RNAz p=0.560881

	14-711, gnl\|bosTau2\|chr11 (40264870-40265557)
	14-711, gnl\|Hg17\|chr2 (62044451-62045155)

	716-818, gnl\|bosTau2\|chr1 (228662-228766)