Non-Coding RNA Search

Ss1.1-Liv1-LVR010011C08.5

Sequence:


               
               TTAACTTGGAGCTTAACCTTGGGCAGGGTCTCATCTGTCTCCACTTCCGCATTCCCAGCC
TTTAGGCGGTGAACCCCTCCCCCACCCCCCACCTCCCAGTTCAAATCCTTTAACACTTGC
TGGGGGGTGGAGAGTGGCCTACCTGGGAGAGAAGGAGGCGCTTGGTGTGGCTCAGGCTTC
TGCTTTGCTCTGCAGTCCCTCTTGCCTCACTCTAGGGGACCGAAGGGGCTTAGTGACCTA
GGCGACGCAGTGCAGGCAGTGGGCATGTGGCCCGGGAGAGGCATTTACGGTAGGACAAAG
GCCACTCAGGAGTTCATTATTGCACATGGGCACCGGCCAGGCCCCCGTGGAGGTGGCGGG
TGGGAGGGACTGGGGACTGGTGAGGCTGAAGACCAGTCCCCGGCCCCACTTCCTCTATTT
GCTCCCCCAAATTCAGGTCTGAGAAAACCTTGCCGCCTGCATTGCTGGGATCCTTTAAAA
TAACCTGGTCCGCTTCCCACACCCCCATCCTGTTACACAGACGAAGAGCGTGAGATCCAG
AGAATCAGGACAGGGAGGGCTCATTGCAGGGCCGGGGCTGCAACGCGGGTTTCCAGGCTT
CCAGGCAGCCATAGAGCACATGGAGCTCCATACCCCCAAGTACAGAGCCACCACGCCTTC
ACCCTCGGGCATTGCTCCCTCAGCCTCAGGCATCGCCCACCTCCAGCTATAAAATCCGAT
TTTCAGATGGCCAGAGTCTCAGCGGTTCCAGGAGTCCAACTGCCCTCCCATCCCCCACGC
CCTCACCCACCCATGCAGGTACCCCTTTCTCCAGCAGCCAAGAGTCTTCTCTCATTTAGG
CTCCTCCCACTGCTCCTACCCAGCCAGAAGCAGAAGCCTTTCTTTTTTCACCCTCTGAGA
CCAGGCTGGTACCACTGATGGGAAAGCGAGGGGAGGAAGGAGCAAATTCAGGCAGGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACTTGGAGCTTAACCTTGGGCAGGGTCTCATCTGTCTCCACTTCCGCATTCCCAGCC
TTTAGGCGGTGAACCCCTCCCCCACCCCCCACCTCCCAGTTCAAATCCTTTAACACTTGC
TGGGGGGTGGAGAGTGGCCTACCTGGGAGAGAAGGAGGCGCTTGGTGTGGCTCAGGCTTC
TGCTTTGCTCTGCAGTCCCTCTTGCCTCACTCTAGGGGACCGAAGGGGCTTAGTGACCTA
GGCGACGCAGTGCAGGCAGTGGGCATGTGGCCCGGGAGAGGCATTTACGGTAGGACAAAG
GCCACTCAGGAGTTCATTATTGCACATGGGCACCGGCCAGGCCCCCGTGGAGGTGGCGGG
TGGGAGGGACTGGGGACTGGTGAGGCTGAAGACCAGTCCCCGGCCCCACTTCCTCTATTT
GCTCCCCCAAATTCAGGTCTGAGAAAACCTTGCCGCCTGCATTGCTGGGATCCTTTAAAA
TAACCTGGTCCGCTTCCCACACCCCCATCCTGTTACACAGACGAAGAGCGTGAGATCCAG
AGAATCAGGACAGGGAGGGCTCATTGCAGGGCCGGGGCTGCAACGCGGGTTTCCAGGCTT
CCAGGCAGCCATAGAGCACATGGAGCTCCATACCCCCAAGTACAGAGCCACCACGCCTTC
ACCCTCGGGCATTGCTCCCTCAGCCTCAGGCATCGCCCACCTCCAGCTATAAAATCCGAT
TTTCAGATGGCCAGAGTCTCAGCGGTTCCAGGAGTCCAACTGCCCTCCCATCCCCCACGC
CCTCACCCACCCATGCAGGTACCCCTTTCTCCAGCAGCCAAGAGTCTTCTCTCATTTAGG
CTCCTCCCACTGCTCCTACCCAGCCAGAAGCAGAAGCCTTTCTTTTTTCACCCTCTGAGA
CCAGGCTGGTACCACTGATGGGAAAGCGAGGGGAGGAAGGAGCAAATTCAGGCAGGAGGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               247-364, - strand, RNAz p=0.810837

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               247-364, - strand, RNAz p=0.810837

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-605, gnl|bosTau2|chr15 (29888023-29888615)
               

               
               3-605, gnl|Hg17|chr11 (71578626-71578015)
               


               
               680-952, gnl|bosTau2|chr15 (29889079-29889350)
               

               
               680-952, gnl|Hg17|chr11 (71577948-71577664)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-605, gnl|bosTau2|chr15 (29888023-29888615)
               

               
               3-605, gnl|Hg17|chr11 (71578626-71578015)
               


               
               680-952, gnl|bosTau2|chr15 (29889079-29889350)
               

               
               680-952, gnl|Hg17|chr11 (71577948-71577664)

	3-605, gnl\|bosTau2\|chr15 (29888023-29888615)
	3-605, gnl\|Hg17\|chr11 (71578626-71578015)

	680-952, gnl\|bosTau2\|chr15 (29889079-29889350)
	680-952, gnl\|Hg17\|chr11 (71577948-71577664)