Non-Coding RNA Search

Ss1.1-Liv1-LVR010011H12.5

Sequence:


               
               TCTGTAAATGGAATGGCTTGCTTTTTAAATATGTATTTAATTTTTTGGTCTAATTCTAGA
AAGGACTTCTGGGAAAGAGGTAGGGACCCAAACTGCTTTTTTCCAAATCGTCTGCCCAGA
CCCCGTTTCCCAAAAAGGCCATTCTTTCCAGGCTGAAGGGCCACCTTTATTGTGCTCCAA
GAGCTTCGTGCTGGTGGATCTCTTTCCAGGCCCTGTCATCCCCATTAGTCCAAACCCTGC
TGTCTTCTTTACTGAATGTCCGCAGGCCCCACTGTCATAATAAATAGTTGGTGCCTTGAA
GGTATTCCATGTAGTGCTGGTTCCACAGGACACTGCCATAGAAAGAATTTGGAAAAGTTG
TCTTTGGTGCCTCCCCACTCCGCTACCTCTTTGGCTTGGATAGTCCTAGTGCTCGGTGCT
GGCGCCAACAGGAGCTTTTCTCCCCCGTGCCTGCCCATTGCACGGAAGGGGTAAGCTAAG
GCAGGCCCTGGGGACCACAGGCTCGCAGGCTGACCCGGCCCGTGGACTCTGCCCTTCCTC
TGGGTCTCAGCCTCTGGCTCTGGGGAACCAGAGGCAGGGGCTGTGATGAGGGGAAGCCAT
TGGTACCTTCCAAGATGCGTTCCCCTTTCCCTTCCACTTGGTACTGCCCATGGGCCAGGC
CGCCTGGGACAACCGCCAACCTTCGGTTCTCCATTTTGTGAACTTCCCAGGACACAAACG
TTTACACCCGGCAGTGTTCTCCTGCCTCTCACTGGGTGCACTCCATCTTGCTGGAACCTT
GGTCCTTGCATGGACACCGGGCCTGGCCCACCTCACACAGGGGCCCCTGGGTCTCAGAAG
CAGAATCCAGGCTGTTTGTTTCTGACCTCCGTAGCTCCAGCACTCAGAGACCCCAGGGGA
TGCAGCCACCCAGGGTGTGTGTCTGCAGCAGGGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTAAATGGAATGGCTTGCTTTTTAAATATGTATTTAATTTTTTGGTCTAATTCTAGA
AAGGACTTCTGGGAAAGAGGTAGGGACCCAAACTGCTTTTTTCCAAATCGTCTGCCCAGA
CCCCGTTTCCCAAAAAGGCCATTCTTTCCAGGCTGAAGGGCCACCTTTATTGTGCTCCAA
GAGCTTCGTGCTGGTGGATCTCTTTCCAGGCCCTGTCATCCCCATTAGTCCAAACCCTGC
TGTCTTCTTTACTGAATGTCCGCAGGCCCCACTGTCATAATAAATAGTTGGTGCCTTGAA
GGTATTCCATGTAGTGCTGGTTCCACAGGACACTGCCATAGAAAGAATTTGGAAAAGTTG
TCTTTGGTGCCTCCCCACTCCGCTACCTCTTTGGCTTGGATAGTCCTAGTGCTCGGTGCT
GGCGCCAACAGGAGCTTTTCTCCCCCGTGCCTGCCCATTGCACGGAAGGGGTAAGCTAAG
GCAGGCCCTGGGGACCACAGGCTCGCAGGCTGACCCGGCCCGTGGACTCTGCCCTTCCTC
TGGGTCTCAGCCTCTGGCTCTGGGGAACCAGAGGCAGGGGCTGTGATGAGGGGAAGCCAT
TGGTACCTTCCAAGATGCGTTCCCCTTTCCCTTCCACTTGGTACTGCCCATGGGCCAGGC
CGCCTGGGACAACCGCCAACCTTCGGTTCTCCATTTTGTGAACTTCCCAGGACACAAACG
TTTACACCCGGCAGTGTTCTCCTGCCTCTCACTGGGTGCACTCCATCTTGCTGGAACCTT
GGTCCTTGCATGGACACCGGGCCTGGCCCACCTCACACAGGGGCCCCTGGGTCTCAGAAG
CAGAATCCAGGCTGTTTGTTTCTGACCTCCGTAGCTCCAGCACTCAGAGACCCCAGGGGA
TGCAGCCACCCAGGGTGTGTGTCTGCAGCAGGGATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               552-668, - strand, RNAz p=0.639782
               

               
               812-921, - strand, RNAz p=0.810333

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               552-668, - strand, RNAz p=0.639782
               

               
               812-921, - strand, RNAz p=0.810333

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               515-667, + strand, RNAmicro p=0.998834

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               515-667, + strand, RNAmicro p=0.998834

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               18-270, gnl|bosTau2|chr7 (28178189-28178438)
               

               
               18-270, gnl|canFam2|chr20 (60235005-60234836)
               

               
               18-270, gnl|dasNov1|scaffold_155464 (1072-906)
               

               
               18-270, gnl|hg17|chr19 (1825269-1825428)
               

               
               18-270, gnl|Hg17|chr19 (1825506-1825261)
               

               
               18-270, gnl|panTro1|chr20 (1906576-1906736)
               

               
               18-270, gnl|rheMac2|chr19 (1648475-1648633)
               


               
               440-921, gnl|bosTau2|chr7 (28178638-28179125)
               

               
               440-921, gnl|Hg17|chr19 (1824883-1824411)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-270, gnl|bosTau2|chr7 (28178189-28178438)
               

               
               18-270, gnl|canFam2|chr20 (60235005-60234836)
               

               
               18-270, gnl|dasNov1|scaffold_155464 (1072-906)
               

               
               18-270, gnl|hg17|chr19 (1825269-1825428)
               

               
               18-270, gnl|Hg17|chr19 (1825506-1825261)
               

               
               18-270, gnl|panTro1|chr20 (1906576-1906736)
               

               
               18-270, gnl|rheMac2|chr19 (1648475-1648633)
               


               
               440-921, gnl|bosTau2|chr7 (28178638-28179125)
               

               
               440-921, gnl|Hg17|chr19 (1824883-1824411)

	552-668, - strand, RNAz p=0.639782
	812-921, - strand, RNAz p=0.810333

	18-270, gnl\|bosTau2\|chr7 (28178189-28178438)
	18-270, gnl\|canFam2\|chr20 (60235005-60234836)
	18-270, gnl\|dasNov1\|scaffold_155464 (1072-906)
	18-270, gnl\|hg17\|chr19 (1825269-1825428)
	18-270, gnl\|Hg17\|chr19 (1825506-1825261)
	18-270, gnl\|panTro1\|chr20 (1906576-1906736)
	18-270, gnl\|rheMac2\|chr19 (1648475-1648633)

	440-921, gnl\|bosTau2\|chr7 (28178638-28179125)
	440-921, gnl\|Hg17\|chr19 (1824883-1824411)