Ss1.1-Liv1-LVR010021H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTGAATACGCCGGGAAGAACAATTACTGCCTGCAGATCAACCCCGCCTCCTCCATCAA CCCCGACCACCTCACCTACTTCCGCTTTATTGGCAGATTCATTGCCATGGCTCTGTACCA TGGAAAGTTCATCGATACGGGCTTCACCCTCCCTTTCTACAAGCGGATGCTGAACAAGAG ACCAACCCTGAAAGACCTGGAGTCCATCGACCCCGAATTCTACAACTCCATCGTCTGGAT CAAAGAGAACAACCTGGAGGAGTGCGGCCTCGAGCTGTACTTCATCCAGGACATGGAGAT CCTGGGCAAGGTGACGACGCACGAGCTGAAGGAAGGCGGGGAGAGCATCCGGGTGACCGA GGAGAACAAGGAAGAGTATATCATGCTGCTGACCGACTGGCGTTTCACCCGGGGCGTGGA AGAGCAGACCAAAGCCTTCCTAGATGGCTTCAACGAGGTGGCCCCCCTGGAGTGGTTGCG CTACTTTGATGAGAAGGAGCTGGAGCTGATGCTGTGCGGCATGCAGGGGATAGACATGAG CGACTGGCAGAAGAACACCATCTACCGGCACTACACCAAGAACAGCAAGCAGATCCAGTG GTTCTGGCAGGTGGTGAAGGAGATGGACAACGAGAAGAGGATCCGGCTGCTGCAGTTTGT CACTGGGACCTGCCGCCTGCCCGTTGGGGGCTTCGTCGAACTCATTGGAAGCAATGGGCC ACAGAAGTTTTGCATTGACAAGGTTGGCAAGGAAACTTGGCTGCCCAGGAGCCACACCTG TTTCAACCGGCTGGACCTCCCACCATACAAGAGCTACGAACAGCTGAAAGAGAAGCTGCT GTACGCCATCGAGGAGACCGAGGGCTTCGGACAGGAGTAGCTGAGGGCGCCCTCTCCCAC GCCCCCCAGCACATATGCAGTCCTGAGTCCTCCCTGCCCGAGAGGCTGCTGGCTGCGCAG CCCCCGGGAAGGCCCTGCAGACGGTGGCCCCGTGTGGGGACACAGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTGAATACGCCGGGAAGAACAATTACTGCCTGCAGATCAACCCCGCCTCCTCCATCAA CCCCGACCACCTCACCTACTTCCGCTTTATTGGCAGATTCATTGCCATGGCTCTGTACCA TGGAAAGTTCATCGATACGGGCTTCACCCTCCCTTTCTACAAGCGGATGCTGAACAAGAG ACCAACCCTGAAAGACCTGGAGTCCATCGACCCCGAATTCTACAACTCCATCGTCTGGAT CAAAGAGAACAACCTGGAGGAGTGCGGCCTCGAGCTGTACTTCATCCAGGACATGGAGAT CCTGGGCAAGGTGACGACGCACGAGCTGAAGGAAGGCGGGGAGAGCATCCGGGTGACCGA GGAGAACAAGGAAGAGTATATCATGCTGCTGACCGACTGGCGTTTCACCCGGGGCGTGGA AGAGCAGACCAAAGCCTTCCTAGATGGCTTCAACGAGGTGGCCCCCCTGGAGTGGTTGCG CTACTTTGATGAGAAGGAGCTGGAGCTGATGCTGTGCGGCATGCAGGGGATAGACATGAG CGACTGGCAGAAGAACACCATCTACCGGCACTACACCAAGAACAGCAAGCAGATCCAGTG GTTCTGGCAGGTGGTGAAGGAGATGGACAACGAGAAGAGGATCCGGCTGCTGCAGTTTGT CACTGGGACCTGCCGCCTGCCCGTTGGGGGCTTCGTCGAACTCATTGGAAGCAATGGGCC ACAGAAGTTTTGCATTGACAAGGTTGGCAAGGAAACTTGGCTGCCCAGGAGCCACACCTG TTTCAACCGGCTGGACCTCCCACCATACAAGAGCTACGAACAGCTGAAAGAGAAGCTGCT GTACGCCATCGAGGAGACCGAGGGCTTCGGACAGGAGTAGCTGAGGGCGCCCTCTCCCAC GCCCCCCAGCACATATGCAGTCCTGAGTCCTCCCTGCCCGAGAGGCTGCTGGCTGCGCAG CCCCCGGGAAGGCCCTGCAGACGGTGGCCCCGTGTGGGGACACAGCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 241-359, + strand, RNAz p=0.619536 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 241-359, + strand, RNAz p=0.619536 |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 2-110, gnl|bosTau2|chr13 (47480027-47479919) | |
| 2-110, gnl|Hg17|chr20 (32531148-32531256) | |
| 2-110, gnl|Mm7|chr2 (154949969-154950077) | |
| 241-385, gnl|bosTau2|chr18 (30539867-30540011) | |
| 241-385, gnl|canFam2|chr5 (82817687-82817563) | |
| 241-385, gnl|danRer3|chr14 (21126565-21126689) | |
| 241-385, gnl|dasNov1|scaffold_5674 (60797-60921) | |
| 241-385, gnl|echTel1|scaffold_296055 (2666-2569) | |
| 241-385, gnl|fr1|chrUn (201322556-201322434) | |
| 241-385, gnl|galGal2|chr11_random (252446-252573) | |
| 241-385, gnl|hg17|chr16 (68527706-68527830) | |
| 241-385, gnl|Hg17|chr16 (68527713-68527857) | |
| 241-385, gnl|loxAfr1|scaffold_131937 (4775-4657) | |
| 241-385, gnl|mm7|chr8 (106154567-106154690) | |
| 241-385, gnl|Mm7|chr8 (106154573-106154717) | |
| 241-385, gnl|monDom2|scaffold_23 (4244012-4243888) | |
| 241-385, gnl|oryCun1|scaffold_207821 (87466-87589) | |
| 241-385, gnl|panTro1|chr18 (62879005-62879129) | |
| 241-385, gnl|rheMac2|chr20 (68322001-68322125) | |
| 241-385, gnl|rn3|chr19 (37430494-37430617) | |
| 241-385, gnl|tetNig1|chr13 (716430-716552) | |
| 241-385, gnl|xenTro1|scaffold_578 (491772-491888) | |
| 390-505, gnl|bosTau2|chr14 (48202201-48202086) | |
| 390-505, gnl|canFam2|chr29 (35609471-35609590) | |
| 390-505, gnl|danRer3|chr14 (21127476-21127595) | |
| 390-505, gnl|dasNov1|scaffold_99939 (4677-4558) | |
| 390-505, gnl|echTel1|scaffold_296055 (2543-2450) | |
| 390-505, gnl|fr1|chrUn (298413641-298413522) | |
| 390-505, gnl|galGal2|chr2 (122471817-122471906) | |
| 390-505, gnl|hg17|chr3 (99861609-99861728) | |
| 390-505, gnl|Hg17|chr8 (87533909-87534024) | |
| 390-505, gnl|loxAfr1|scaffold_1882 (91177-91295) | |
| 390-505, gnl|mm7|chr2 (24600710-24600591) | |
| 390-505, gnl|Mm7|chr4 (19550365-19550250) | |
| 390-505, gnl|monDom2|scaffold_3 (81654457-81654338) | |
| 390-505, gnl|oryCun1|scaffold_103469 (1233-1351) | |
| 390-505, gnl|panTro1|chr2 (101049294-101049414) | |
| 390-505, gnl|rheMac2|chr2 (18862680-18862798) | |
| 390-505, gnl|rn3|chr5 (34249574-34249455) | |
| 390-505, gnl|tetNig1|chrUn_random (134157424-134157305) | |
| 390-505, gnl|xenTro1|scaffold_492 (529498-529379) | |
| 608-708, gnl|bosTau2|chr18 (30542425-30542525) | |
| 608-708, gnl|canFam2|chr5 (82815436-82815331) | |
| 608-708, gnl|danRer3|chr14 (21128886-21128990) | |
| 608-708, gnl|dasNov1|scaffold_99939 (4453-4353) | |
| 608-708, gnl|echTel1|scaffold_202341 (3563-3459) | |
| 608-708, gnl|fr1|chrUn (201321531-201321427) | |
| 608-708, gnl|galGal2|chr11_random (253446-253551) | |
| 608-708, gnl|hg17|chr16 (68530429-68530534) | |
| 608-708, gnl|Hg17|chr16 (68530428-68530528) | |
| 608-708, gnl|loxAfr1|scaffold_165521 (250-355) | |
| 608-708, gnl|mm7|chr8 (106156602-106156707) | |
| 608-708, gnl|Mm7|chr8 (106156601-106156701) | |
| 608-708, gnl|monDom2|scaffold_23 (4236900-4236795) | |
| 608-708, gnl|oryCun1|scaffold_41558 (1260-1155) | |
| 608-708, gnl|panTro1|chr18 (62882067-62882172) | |
| 608-708, gnl|rheMac2|chr20 (68324658-68324763) | |
| 608-708, gnl|rn3|chr19 (37432511-37432616) | |
| 608-708, gnl|tetNig1|chr13 (717401-717505) | |
| 608-708, gnl|xenTro1|scaffold_578 (493262-493366) | |
| 780-1004, gnl|bosTau2|chr18 (30544083-30544309) | |
| 780-1004, gnl|Hg17|chr16 (68531244-68531466) | |
| 780-1004, gnl|Mm7|chr8 (106157029-106157249) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-110, gnl|bosTau2|chr13 (47480027-47479919) | |
| 2-110, gnl|Hg17|chr20 (32531148-32531256) | |
| 2-110, gnl|Mm7|chr2 (154949969-154950077) | |
| 241-385, gnl|bosTau2|chr18 (30539867-30540011) | |
| 241-385, gnl|canFam2|chr5 (82817687-82817563) | |
| 241-385, gnl|danRer3|chr14 (21126565-21126689) | |
| 241-385, gnl|dasNov1|scaffold_5674 (60797-60921) | |
| 241-385, gnl|echTel1|scaffold_296055 (2666-2569) | |
| 241-385, gnl|fr1|chrUn (201322556-201322434) | |
| 241-385, gnl|galGal2|chr11_random (252446-252573) | |
| 241-385, gnl|hg17|chr16 (68527706-68527830) | |
| 241-385, gnl|Hg17|chr16 (68527713-68527857) | |
| 241-385, gnl|loxAfr1|scaffold_131937 (4775-4657) | |
| 241-385, gnl|mm7|chr8 (106154567-106154690) | |
| 241-385, gnl|Mm7|chr8 (106154573-106154717) | |
| 241-385, gnl|monDom2|scaffold_23 (4244012-4243888) | |
| 241-385, gnl|oryCun1|scaffold_207821 (87466-87589) | |
| 241-385, gnl|panTro1|chr18 (62879005-62879129) | |
| 241-385, gnl|rheMac2|chr20 (68322001-68322125) | |
| 241-385, gnl|rn3|chr19 (37430494-37430617) | |
| 241-385, gnl|tetNig1|chr13 (716430-716552) | |
| 241-385, gnl|xenTro1|scaffold_578 (491772-491888) | |
| 390-505, gnl|bosTau2|chr14 (48202201-48202086) | |
| 390-505, gnl|canFam2|chr29 (35609471-35609590) | |
| 390-505, gnl|danRer3|chr14 (21127476-21127595) | |
| 390-505, gnl|dasNov1|scaffold_99939 (4677-4558) | |
| 390-505, gnl|echTel1|scaffold_296055 (2543-2450) | |
| 390-505, gnl|fr1|chrUn (298413641-298413522) | |
| 390-505, gnl|galGal2|chr2 (122471817-122471906) | |
| 390-505, gnl|hg17|chr3 (99861609-99861728) | |
| 390-505, gnl|Hg17|chr8 (87533909-87534024) | |
| 390-505, gnl|loxAfr1|scaffold_1882 (91177-91295) | |
| 390-505, gnl|mm7|chr2 (24600710-24600591) | |
| 390-505, gnl|Mm7|chr4 (19550365-19550250) | |
| 390-505, gnl|monDom2|scaffold_3 (81654457-81654338) | |
| 390-505, gnl|oryCun1|scaffold_103469 (1233-1351) | |
| 390-505, gnl|panTro1|chr2 (101049294-101049414) | |
| 390-505, gnl|rheMac2|chr2 (18862680-18862798) | |
| 390-505, gnl|rn3|chr5 (34249574-34249455) | |
| 390-505, gnl|tetNig1|chrUn_random (134157424-134157305) | |
| 390-505, gnl|xenTro1|scaffold_492 (529498-529379) | |
| 608-708, gnl|bosTau2|chr18 (30542425-30542525) | |
| 608-708, gnl|canFam2|chr5 (82815436-82815331) | |
| 608-708, gnl|danRer3|chr14 (21128886-21128990) | |
| 608-708, gnl|dasNov1|scaffold_99939 (4453-4353) | |
| 608-708, gnl|echTel1|scaffold_202341 (3563-3459) | |
| 608-708, gnl|fr1|chrUn (201321531-201321427) | |
| 608-708, gnl|galGal2|chr11_random (253446-253551) | |
| 608-708, gnl|hg17|chr16 (68530429-68530534) | |
| 608-708, gnl|Hg17|chr16 (68530428-68530528) | |
| 608-708, gnl|loxAfr1|scaffold_165521 (250-355) | |
| 608-708, gnl|mm7|chr8 (106156602-106156707) | |
| 608-708, gnl|Mm7|chr8 (106156601-106156701) | |
| 608-708, gnl|monDom2|scaffold_23 (4236900-4236795) | |
| 608-708, gnl|oryCun1|scaffold_41558 (1260-1155) | |
| 608-708, gnl|panTro1|chr18 (62882067-62882172) | |
| 608-708, gnl|rheMac2|chr20 (68324658-68324763) | |
| 608-708, gnl|rn3|chr19 (37432511-37432616) | |
| 608-708, gnl|tetNig1|chr13 (717401-717505) | |
| 608-708, gnl|xenTro1|scaffold_578 (493262-493366) | |
| 780-1004, gnl|bosTau2|chr18 (30544083-30544309) | |
| 780-1004, gnl|Hg17|chr16 (68531244-68531466) | |
| 780-1004, gnl|Mm7|chr8 (106157029-106157249) |