Non-Coding RNA Search

Ss1.1-Liv1-LVR010028E05.5

Sequence:


               
               ACACTTCCGAAAATGTTAGGAGCCGCTCCGCGCCTTCCGCGGGGACTCCGGATCCGGAGC
TGGGTTTCACATCCGCGCACATCGCCAGAGTGGAATTTGAGGGCTGTGCCGTGATCTTGA
TGGTTCCAACCCGGCTCCATCAGGGCCACCGGGCACTTCCTGCGAGATGGGGGCGGGCGC
TCTCGCCATCTGTGTGAGTACAGGCCACCTCTGCCTCCGTGCGCCCTGCCAGGGCGCGCA
GAGGCCTCGGCCCTCCCGGTTTTGCGATGCCTGTGTCACTTAGTTTTTCCCTTCCTAGGA
GGTGGGGGGAAGGTTCCCTTAAATTCCTTTCTATTCACATGGACGTTGATTGGGGGGGGG
GGGCAGTCCGTATTTTCGTCCACTTTCCTTTTTCAAAAAAAAGTGAGAGCGATGCATGCG
GAGCTCATTCGGGTCCGTGAACTTGATCTACTGTCCATCAGTCTCAAGCCTTGTAAGACA
TTTTTTGTTCTGAAAGATTTAAATACGAACGCTTCCTTGTAGCTACTGGAAATATCTTGT
GCCTAGATGGAGCATGAATTAAAAGAATTCAAGTAACCATTCATTAATTTCCCTCGGAGA
ATGTAACATTTTTTTTCATTCCACATTTTTGTTTTCATTTAGTAATTCTAAAATTTTTGT
TTCAAGAGGGTTGCTAAAAGTGATGGTAAAAGAGCTAACTAAGCTAATAAATGTGTGTGA
ATCCTGAGTCACCTATAGAAACCACTGGTTGTAATACTGTAGCAGCAGTAAATAACACTG
ATCTAAAAATCTATGGGAAAATGTGTATATGTCTAGGGCTGAAATTCATGAATTTCAAAG
CACTTCCGTTGGTGCTTACGTGTAAGCTTTTGCAGTAACCAAATTTATCTTCAATTACTT
CAGGATACTGTAATTAAATTTTTTAATTTCAGTGTATAGCAAATGCATAAATAAAATCTC
AAGTTGATATTGTATTCTAGGTGGGCATTATATTTGTCCCTGGAGGTACTACATGAGAAA
TATCTTATTCTGTATTATCACCTTTCATTTCTCCCACGTGTCATCACATATAGGTCAGAT
CCAATGTGTTTTTCAGGTTTCAGCAAGAGCTGCGTTTTGTTGTAGGCTGTGATGGCATCC
TACCAGACATAGATGGGTAATTTTTGACACATAGGCCCTGAATGGCCACCAGATGGTGGC
TTAGTCCCACAGGTTGAATTTTCTTAGTTAAGACTGCAAGGTGACACCATCATGTCCACG
CTCAGAACTTCTCAGCGTCCTGTGAGCCCGTCTTCCTGACTCCCTTCCTTTCAGCCCCAA
GCTTGTAGGATTCAGCTGCTGATCTTTTTCCTTTTCCAAAGAGGTTCCTTTCCTAAGGGG
AACATACTGAGCTTTCATTTTCCTACAGACACAGGTCTGCTTTTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACTTCCGAAAATGTTAGGAGCCGCTCCGCGCCTTCCGCGGGGACTCCGGATCCGGAGC
TGGGTTTCACATCCGCGCACATCGCCAGAGTGGAATTTGAGGGCTGTGCCGTGATCTTGA
TGGTTCCAACCCGGCTCCATCAGGGCCACCGGGCACTTCCTGCGAGATGGGGGCGGGCGC
TCTCGCCATCTGTGTGAGTACAGGCCACCTCTGCCTCCGTGCGCCCTGCCAGGGCGCGCA
GAGGCCTCGGCCCTCCCGGTTTTGCGATGCCTGTGTCACTTAGTTTTTCCCTTCCTAGGA
GGTGGGGGGAAGGTTCCCTTAAATTCCTTTCTATTCACATGGACGTTGATTGGGGGGGGG
GGGCAGTCCGTATTTTCGTCCACTTTCCTTTTTCAAAAAAAAGTGAGAGCGATGCATGCG
GAGCTCATTCGGGTCCGTGAACTTGATCTACTGTCCATCAGTCTCAAGCCTTGTAAGACA
TTTTTTGTTCTGAAAGATTTAAATACGAACGCTTCCTTGTAGCTACTGGAAATATCTTGT
GCCTAGATGGAGCATGAATTAAAAGAATTCAAGTAACCATTCATTAATTTCCCTCGGAGA
ATGTAACATTTTTTTTCATTCCACATTTTTGTTTTCATTTAGTAATTCTAAAATTTTTGT
TTCAAGAGGGTTGCTAAAAGTGATGGTAAAAGAGCTAACTAAGCTAATAAATGTGTGTGA
ATCCTGAGTCACCTATAGAAACCACTGGTTGTAATACTGTAGCAGCAGTAAATAACACTG
ATCTAAAAATCTATGGGAAAATGTGTATATGTCTAGGGCTGAAATTCATGAATTTCAAAG
CACTTCCGTTGGTGCTTACGTGTAAGCTTTTGCAGTAACCAAATTTATCTTCAATTACTT
CAGGATACTGTAATTAAATTTTTTAATTTCAGTGTATAGCAAATGCATAAATAAAATCTC
AAGTTGATATTGTATTCTAGGTGGGCATTATATTTGTCCCTGGAGGTACTACATGAGAAA
TATCTTATTCTGTATTATCACCTTTCATTTCTCCCACGTGTCATCACATATAGGTCAGAT
CCAATGTGTTTTTCAGGTTTCAGCAAGAGCTGCGTTTTGTTGTAGGCTGTGATGGCATCC
TACCAGACATAGATGGGTAATTTTTGACACATAGGCCCTGAATGGCCACCAGATGGTGGC
TTAGTCCCACAGGTTGAATTTTCTTAGTTAAGACTGCAAGGTGACACCATCATGTCCACG
CTCAGAACTTCTCAGCGTCCTGTGAGCCCGTCTTCCTGACTCCCTTCCTTTCAGCCCCAA
GCTTGTAGGATTCAGCTGCTGATCTTTTTCCTTTTCCAAAGAGGTTCCTTTCCTAAGGGG
AACATACTGAGCTTTCATTTTCCTACAGACACAGGTCTGCTTTTTCCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               199-349, - strand, RNAz p=0.98708
               

               
               607-724, + strand, RNAz p=0.699302

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-349, - strand, RNAz p=0.98708
               

               
               607-724, + strand, RNAz p=0.699302

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               661-727, + strand, RNAmicro p=0.994965
               

               
               170-259, + strand, RNAmicro p=0.989576

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               661-727, + strand, RNAmicro p=0.994965
               

               
               170-259, + strand, RNAmicro p=0.989576

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1370, gnl|bosTau2|chr6 (15760065-15761442)
               

               
               1-1370, gnl|Hg17|chr4 (90335460-90334050)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1370, gnl|bosTau2|chr6 (15760065-15761442)
               

               
               1-1370, gnl|Hg17|chr4 (90335460-90334050)

	199-349, - strand, RNAz p=0.98708
	607-724, + strand, RNAz p=0.699302

	661-727, + strand, RNAmicro p=0.994965
	170-259, + strand, RNAmicro p=0.989576

	1-1370, gnl\|bosTau2\|chr6 (15760065-15761442)
	1-1370, gnl\|Hg17\|chr4 (90335460-90334050)