Non-Coding RNA Search

Ss1.1-Liv1-LVR010048B04.5

Sequence:


               
               GCTCCTCCTCCGCCCCCGACGGCGGCTTTGGCTCCGGGTCCGCCTCCTCCGCGGCTGGGA
CCTGAACGTCCGCCGGCCCAGGCGCTTCCTGGGCCGGGGGCTCCTCTTCATTATCTGATG
CCTTAGTGGGGACATATGGTGAGGGGAAATCAGGTCCCTCAGCCTCGCTGAGACTCTCTT
GGGGGGCCTTGTCTATGGGGAGCCTGGGCTCCAGCGCCTCTTCGGTCTCTTTCCCAGCAG
CCTCAGCCTCCCCATTGCTGCCCCGAGCCTGGTCTCCCCTGGAGCCCTTCTTTCTGCGGA
TGGAGGCTCGGACTAGGTCAGAACCCAGGTGGGTGTGGTGGTGCCTCTGGGAGCGTGCTT
CCTGGAACCAGTCCCCTGTTAGGATCTTCAGCTGCCCAGGGTCTTCCAGTGATGCCCGGA
GCTTTCTGACCCGTCCCTCCTCCAGCTGCCGTAGGTGGGCATCTCGCTTCAGGACCTCAG
CAATGGCTTCCTGTTCCTCCTCCGTCAGGAAGCTGAGGTCCAGTAACCCATCAGCCTCAG
GCTCTGGCTCATGTGCCATGAGGAGGCCAGGCAGGACCCGGAGCCCCTCTTGAGATGGGT
GGCCCCTCTGGGGCATCAGCTGGGGCGGTGCCCCCGCTGGGCACACGTGGCTCCCTGTAG
GGGTCCAGTATGGAGGGGACGGCTTCGTAGGGCAGCCCCGGCTCCCCTGGCAGCTGAGTT
TCAGGGAGCAGAAGAGCAGTGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCTCCTCCGCCCCCGACGGCGGCTTTGGCTCCGGGTCCGCCTCCTCCGCGGCTGGGA
CCTGAACGTCCGCCGGCCCAGGCGCTTCCTGGGCCGGGGGCTCCTCTTCATTATCTGATG
CCTTAGTGGGGACATATGGTGAGGGGAAATCAGGTCCCTCAGCCTCGCTGAGACTCTCTT
GGGGGGCCTTGTCTATGGGGAGCCTGGGCTCCAGCGCCTCTTCGGTCTCTTTCCCAGCAG
CCTCAGCCTCCCCATTGCTGCCCCGAGCCTGGTCTCCCCTGGAGCCCTTCTTTCTGCGGA
TGGAGGCTCGGACTAGGTCAGAACCCAGGTGGGTGTGGTGGTGCCTCTGGGAGCGTGCTT
CCTGGAACCAGTCCCCTGTTAGGATCTTCAGCTGCCCAGGGTCTTCCAGTGATGCCCGGA
GCTTTCTGACCCGTCCCTCCTCCAGCTGCCGTAGGTGGGCATCTCGCTTCAGGACCTCAG
CAATGGCTTCCTGTTCCTCCTCCGTCAGGAAGCTGAGGTCCAGTAACCCATCAGCCTCAG
GCTCTGGCTCATGTGCCATGAGGAGGCCAGGCAGGACCCGGAGCCCCTCTTGAGATGGGT
GGCCCCTCTGGGGCATCAGCTGGGGCGGTGCCCCCGCTGGGCACACGTGGCTCCCTGTAG
GGGTCCAGTATGGAGGGGACGGCTTCGTAGGGCAGCCCCGGCTCCCCTGGCAGCTGAGTT
TCAGGGAGCAGAAGAGCAGTGAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55961181|emb|CAI14786.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55961181|emb|CAI14786.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               426-657, - strand, RNAz p=0.971264

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-657, - strand, RNAz p=0.971264

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of AK074154, -

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK074154, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               426-657, gnl|bosTau2|chr2 (78051570-78051801)
               

               
               426-657, gnl|Hg17|chr1 (27356158-27355927)
               

               
               426-657, gnl|Mm7|chr4 (132639286-132639517)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               426-657, gnl|bosTau2|chr2 (78051570-78051801)
               

               
               426-657, gnl|Hg17|chr1 (27356158-27355927)
               

               
               426-657, gnl|Mm7|chr4 (132639286-132639517)

	426-657, gnl\|bosTau2\|chr2 (78051570-78051801)
	426-657, gnl\|Hg17\|chr1 (27356158-27355927)
	426-657, gnl\|Mm7\|chr4 (132639286-132639517)