Non-Coding RNA Search

Ss1.1-Liv1-LVR010048C05.5

Sequence:


               
               TCCTAACCCACTGAGCCCCAACAGGAGCTCCCTGGAGTAGCACTTTTT------------
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------------TAGGGTGGCACTTCTAATCAGACCTTCCTCCCAGGGCCACACTCAGCC
CAGAGCCGGTCACCTCCTTGTCACTCGGAGACCATTTGGTCCAAGCAACTTGTTCAGCAA
ATGGAGGACTTGGGTCTGAGCCAACAGGGCGGGAGCTCAGTAAAGTCATCTTCCCACGCC
CTCCGGGGCTTGGCCTTCATCGCTGTTGGCCCACAGCGCCGGCCAGGGACCCGGAGGCCT
GGATTCGGTTCCCTGCTCCGCTTCATCCACGTCCCTTCCCCTCCCGGCTCCGTGTCCCCA
TCTGTACAGTGGGGTCAGCACAGGTGACCAAGGAAGACAGGATTTCTCGGCAGGGACATG
ACTGCTGGGGAGCCGCTGGCTGAAGGTGGCGTGTGTGCGTGCACACGTGTCCACACGTCT
GCATGCGTGTGCACAGCCATCCCTCCCCTGGCTCCCCGGTGGAAGGCAGGAAGGGACATT
CGGAGCCCTGGACTCCACCATAGTTGGTTTAATTACAGGTTTTCAGCCTCAGGCCGGTGG
GCACGGGTTGGGAAGAGGGGGGAGCGGCTCTGAAACCCTGTCATTTTCCATCGTCTGAGG
GCCTCTTCGAAGGGGGGCATCTAGACATTTTCTCCACAAGCCGCAGAGTGGACTGTCGTG
GCCCCAGCATGAACATAATGGCAGATGCATTTTGCGGCAAGCTGGGAGTGAATGGGTCCG
ACCGGCTTGTCTCCTGTCACACGAGTCATTATTATTTTTTTTTTGTCATTTGCTGACAGT
TTGGGTTTCATGCGTTTCTCTCTTTTTTCTGCCTTTCCCCCTGCCTGGAAAGATGGCTAG
GTATCTACGAGACCCCAGCGGGGACGATTCTTTACCACGCTCATTTAGACATCGAGGCCT
TCACCATGGACCGGGAGGTGCGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTAACCCACTGAGCCCCAACAGGAGCTCCCTGGAGTAGCACTTTTT------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------TAGGGTGGCACTTCTAATCAGACCTTCCTCCCAGGGCCACACTCAGCC
CAGAGCCGGTCACCTCCTTGTCACTCGGAGACCATTTGGTCCAAGCAACTTGTTCAGCAA
ATGGAGGACTTGGGTCTGAGCCAACAGGGCGGGAGCTCAGTAAAGTCATCTTCCCACGCC
CTCCGGGGCTTGGCCTTCATCGCTGTTGGCCCACAGCGCCGGCCAGGGACCCGGAGGCCT
GGATTCGGTTCCCTGCTCCGCTTCATCCACGTCCCTTCCCCTCCCGGCTCCGTGTCCCCA
TCTGTACAGTGGGGTCAGCACAGGTGACCAAGGAAGACAGGATTTCTCGGCAGGGACATG
ACTGCTGGGGAGCCGCTGGCTGAAGGTGGCGTGTGTGCGTGCACACGTGTCCACACGTCT
GCATGCGTGTGCACAGCCATCCCTCCCCTGGCTCCCCGGTGGAAGGCAGGAAGGGACATT
CGGAGCCCTGGACTCCACCATAGTTGGTTTAATTACAGGTTTTCAGCCTCAGGCCGGTGG
GCACGGGTTGGGAAGAGGGGGGAGCGGCTCTGAAACCCTGTCATTTTCCATCGTCTGAGG
GCCTCTTCGAAGGGGGGCATCTAGACATTTTCTCCACAAGCCGCAGAGTGGACTGTCGTG
GCCCCAGCATGAACATAATGGCAGATGCATTTTGCGGCAAGCTGGGAGTGAATGGGTCCG
ACCGGCTTGTCTCCTGTCACACGAGTCATTATTATTTTTTTTTTGTCATTTGCTGACAGT
TTGGGTTTCATGCGTTTCTCTCTTTTTTCTGCCTTTCCCCCTGCCTGGAAAGATGGCTAG
GTATCTACGAGACCCCAGCGGGGACGATTCTTTACCACGCTCATTTAGACATCGAGGCCT
TCACCATGGACCGGGAGGTGCGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61869804|ref|XP_610886.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61869804|ref|XP_610886.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               399-550, - strand, RNAz p=0.992781

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-550, - strand, RNAz p=0.992781

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-960, gnl|bosTau2|chr11 (81111093-81111995)
               

               
               65-960, gnl|Hg17|chr9 (130393442-130394357)
               

               
               65-960, gnl|Mm7|chr2 (31516620-31517504)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-960, gnl|bosTau2|chr11 (81111093-81111995)
               

               
               65-960, gnl|Hg17|chr9 (130393442-130394357)
               

               
               65-960, gnl|Mm7|chr2 (31516620-31517504)

	65-960, gnl\|bosTau2\|chr11 (81111093-81111995)
	65-960, gnl\|Hg17\|chr9 (130393442-130394357)
	65-960, gnl\|Mm7\|chr2 (31516620-31517504)