Non-Coding RNA Search

Ss1.1-Liv1-LVR010050D10.5

Sequence:


               
               GGCGCCCTGGCTGCGGCGGGGCGTCCGTCGGGTTCTCAGGGGTCCCCTGGGTTCCGGCGT
CGGGGGCCCCCCGCTCGGGCTCTTGACCCTGCTCACCCACGGGACCTCCGGCCTGGCCCC
GCGCCCGCTCTGGAGGCGGCCCCACGGCCGCTTCGCGCTGCAGCTCTCGCTCGCTCTCGC
GGTCCCGCGCGGCGCGCAGCTGGGTTTCCACGGCGGCCAGCTTGTGCCGCAACTCCGCAT
TCACCAGCAGGAGGCGCTGCAGCTGCTCCTGCAACGCCTCGGTCTCCTGGCTGCGCTGCA
GCAAGTCACGGTTGTGAGCTCGGAGTTCGTCTCTCTGGCGGTCGGTCACCTCCTTGAGCT
GCCGCAGCAGAGCGCGCTCTTCCTGTGGCCCAGAGCGCAACTCTATACGGAGGCGCTCGT
TCTCCTCCCGCAGCCGCCGCAGCTCCAGTTCGGCCTGCTGCGCCGATACCTGCAGCGAGT
CTGGGGCGGGCCCGACGGCCGCCTTTTCCAGAAGCTCCAGCGCCCTCACCACGAGCGGCA
CGAGCCCGGCCGCAGCCTCCGGCCCGAAGCGGCGCGCCAGCTCCTTCAGCTCAGTGCCCA
GGGCCCCCGCTAGGTGGTACACGAGCTCCGCGGCCGTCCCGGACCCCGCGTCCACCCGAG
GCCCCCAGTCGTGCGCCCCAGGACCAACCCTCCTGGGCTCCATGTCTCCCAAGGCGACTG
GGGCTGCGACACCCTCCCCACGCCCCCAACTAGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCCCTGGCTGCGGCGGGGCGTCCGTCGGGTTCTCAGGGGTCCCCTGGGTTCCGGCGT
CGGGGGCCCCCCGCTCGGGCTCTTGACCCTGCTCACCCACGGGACCTCCGGCCTGGCCCC
GCGCCCGCTCTGGAGGCGGCCCCACGGCCGCTTCGCGCTGCAGCTCTCGCTCGCTCTCGC
GGTCCCGCGCGGCGCGCAGCTGGGTTTCCACGGCGGCCAGCTTGTGCCGCAACTCCGCAT
TCACCAGCAGGAGGCGCTGCAGCTGCTCCTGCAACGCCTCGGTCTCCTGGCTGCGCTGCA
GCAAGTCACGGTTGTGAGCTCGGAGTTCGTCTCTCTGGCGGTCGGTCACCTCCTTGAGCT
GCCGCAGCAGAGCGCGCTCTTCCTGTGGCCCAGAGCGCAACTCTATACGGAGGCGCTCGT
TCTCCTCCCGCAGCCGCCGCAGCTCCAGTTCGGCCTGCTGCGCCGATACCTGCAGCGAGT
CTGGGGCGGGCCCGACGGCCGCCTTTTCCAGAAGCTCCAGCGCCCTCACCACGAGCGGCA
CGAGCCCGGCCGCAGCCTCCGGCCCGAAGCGGCGCGCCAGCTCCTTCAGCTCAGTGCCCA
GGGCCCCCGCTAGGTGGTACACGAGCTCCGCGGCCGTCCCGGACCCCGCGTCCACCCGAG
GCCCCCAGTCGTGCGCCCCAGGACCAACCCTCCTGGGCTCCATGTCTCCCAAGGCGACTG
GGGCTGCGACACCCTCCCCACGCCCCCAACTAGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16550561|dbj|BAB71003.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16550561|dbj|BAB71003.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               622-737, - strand, RNAz p=0.726043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               622-737, - strand, RNAz p=0.726043

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               29-275, gnl|bosTau2|chr19 (17289533-17289779)
               

               
               29-275, gnl|Hg17|chr17 (1498843-1499089)
               

               
               29-275, gnl|Mm7|chr11 (75592623-75592395)
               


               
               460-737, gnl|bosTau2|chr19 (17290217-17290495)
               

               
               460-737, gnl|Hg17|chr17 (1499609-1499885)
               

               
               460-737, gnl|Mm7|chr11 (75591957-75591690)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-275, gnl|bosTau2|chr19 (17289533-17289779)
               

               
               29-275, gnl|Hg17|chr17 (1498843-1499089)
               

               
               29-275, gnl|Mm7|chr11 (75592623-75592395)
               


               
               460-737, gnl|bosTau2|chr19 (17290217-17290495)
               

               
               460-737, gnl|Hg17|chr17 (1499609-1499885)
               

               
               460-737, gnl|Mm7|chr11 (75591957-75591690)

	29-275, gnl\|bosTau2\|chr19 (17289533-17289779)
	29-275, gnl\|Hg17\|chr17 (1498843-1499089)
	29-275, gnl\|Mm7\|chr11 (75592623-75592395)

	460-737, gnl\|bosTau2\|chr19 (17290217-17290495)
	460-737, gnl\|Hg17\|chr17 (1499609-1499885)
	460-737, gnl\|Mm7\|chr11 (75591957-75591690)