Non-Coding RNA Search

Ss1.1-Liv1-LVR010054C11.5

Sequence:


               
               ACAAGGTTAGTGGGGGGATTGAAAGAGATGATGAATGCAGAGCCCTTATCAGAGTGTATA
GAGCACAGAGTAAGCTCTCAATTAGGGGTGAAAATACATTGTAAAAGCATCAATCCAGAA
AAAAATATTACAGCATTTCTAGAGAAAGGTAAAGGAAATGATCTTATTGTTTTAAGAAAT
CCCTAAGAGCTGAAGTGGGATTTTACATTAGCAGGTATTCTTTTAAATGGATAACATCTG
TTTAGAATTGTGTTGAGGTGGTAGAGAAGAAAGAACAAAACATTTACACAGGTTAGTAAT
AAATGGGTGACTAGAGGTTCTGAACTGCCCACTGGTGTAAATAGGTAGAGGCCTTGTGTT
TTCCTCCTGAAGTTGCCATTAGAGGGCAGTGTGAGAGCAGAAGTAGCGTGATTTGGGACC
ATTCTGGTTATTTTCCTTAATGAAGAGCAAATCTGCTTCAGAATGAAAGTGGCTTTCATA
CAAGGAAATGATGTAATTGCACTTGACTTTGATAAATAAACTCAGAATTTAAAAAAATCG
ACAAAACCATCCTTGGAGGGGCTGGTAGTCCCAGCCTGGGGCCAAGGTGGGGCAGACACT
GGGCAGACCCAGTTGTGGTCCCCTCCAGCCCTTCTTCAAGTGTGGCAGCAAGACCCCACC
AGGTGGTGCAGCCAGCTTCTCCAATGTCCCATCATTATCGCTCCCAAGCTGCCCTGAGAA
TCAGTGGTTGTCAGGCTCGCCCACAGGGAGGCGCAGCAGTGAACCCCTTACTTTACAGTG
GCCCCTGCCCCTCACAGAGCTGGAGCAGCTGTCAGAGCCTCGCCTGTTCTCACACTGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAGGTTAGTGGGGGGATTGAAAGAGATGATGAATGCAGAGCCCTTATCAGAGTGTATA
GAGCACAGAGTAAGCTCTCAATTAGGGGTGAAAATACATTGTAAAAGCATCAATCCAGAA
AAAAATATTACAGCATTTCTAGAGAAAGGTAAAGGAAATGATCTTATTGTTTTAAGAAAT
CCCTAAGAGCTGAAGTGGGATTTTACATTAGCAGGTATTCTTTTAAATGGATAACATCTG
TTTAGAATTGTGTTGAGGTGGTAGAGAAGAAAGAACAAAACATTTACACAGGTTAGTAAT
AAATGGGTGACTAGAGGTTCTGAACTGCCCACTGGTGTAAATAGGTAGAGGCCTTGTGTT
TTCCTCCTGAAGTTGCCATTAGAGGGCAGTGTGAGAGCAGAAGTAGCGTGATTTGGGACC
ATTCTGGTTATTTTCCTTAATGAAGAGCAAATCTGCTTCAGAATGAAAGTGGCTTTCATA
CAAGGAAATGATGTAATTGCACTTGACTTTGATAAATAAACTCAGAATTTAAAAAAATCG
ACAAAACCATCCTTGGAGGGGCTGGTAGTCCCAGCCTGGGGCCAAGGTGGGGCAGACACT
GGGCAGACCCAGTTGTGGTCCCCTCCAGCCCTTCTTCAAGTGTGGCAGCAAGACCCCACC
AGGTGGTGCAGCCAGCTTCTCCAATGTCCCATCATTATCGCTCCCAAGCTGCCCTGAGAA
TCAGTGGTTGTCAGGCTCGCCCACAGGGAGGCGCAGCAGTGAACCCCTTACTTTACAGTG
GCCCCTGCCCCTCACAGAGCTGGAGCAGCTGTCAGAGCCTCGCCTGTTCTCACACTGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               512-668, - strand, RNAz p=0.868426

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               512-668, - strand, RNAz p=0.868426

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               570-654, + strand, RNAmicro p=0.914761

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               570-654, + strand, RNAmicro p=0.914761

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               174-777, gnl|bosTau2|chr2 (53051423-53050817)
               

               
               174-777, gnl|Hg17|chr2 (197012134-197011296)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-777, gnl|bosTau2|chr2 (53051423-53050817)
               

               
               174-777, gnl|Hg17|chr2 (197012134-197011296)

	174-777, gnl\|bosTau2\|chr2 (53051423-53050817)
	174-777, gnl\|Hg17\|chr2 (197012134-197011296)