Non-Coding RNA Search

Ss1.1-Liv1-LVR010056G01.5

Sequence:


               
               AAAAGTTTGCGCGCTGCTGGCGCGGGGCGCGGGCGCGGAGCTGGCGCCGACCCTGATCCG
GCAGCGCCGCGGAGACGGGCGGCCGCCAGCCCCCGGCCCGAGCGCGCGGAAGACGGCGGG
GGGCGCTGAGCGACCGGAGCCGCGCGCGGCGAGCCCTTGGGCCGGACACCGAGGGCATGT
TCCCGGCCGCGGGCCGAAGGCGGGAGCGCGGGACCGGCCGGCGCCGACTCCTAAGACCCG
AGGCATGCGTGCGCCACGAGGACCTCTCTGCCCAGCACTCAACCCCAGCCAGATGTGGGG
GGCAGCTGCCCGGAGGCATGCCCCCCGCCCGGCTGCGCCACCCCCACCTCCTCCTGCTGC
TGCTGCTGGCCTGCCAGCCACAGGCCCCCGCCGCGCAGGCGATGGACTTCCTCTTCCAGA
AGTGGAAGCTCTACGGCGACCAGTGTCTCCGCAACCTGAGCCTGCTGCCCCCGCCCACCG
AGCTGGTCTGTAATAGAACCTTCGACAAGTACTCCTGCTGGCCCGACACCCCTCCCAACA
CCACGGCCAACATCTCCTGCCCCTGGTACCTGCCCTGGTACCACAAAGTGCAGCACCGGC
TCGTCTTCAAACGGTGTGGGCCCGATGGGCAGTGGGTGCGTGGGCCGCGGGGGCAGCCGT
GGCGCAACGCCTCCCAGTGCCAGGTGGACGACGAGGAGCTTGGGGTCCAGAGGGAGGTGG
CTGAGATGTACAGCAGCTTCCAGGCGATGTACACGGCCGGCTACTCCCTGTCCCTCGCAG
CCCTGCTCCTGGCCCTGGCCATCCTGCTGGGCCTCAGCAAGCTGCACTGCACCCGAAACT
ACATCCACGCGAACCTGCTTGCGTCCTTCGTGCTCAGGGCCAGCTCCGTGCTGGCCCTCG
ACGCGCTCCTCAAGACCCGCTACAGCCAGCGGCTTGGGGACGACCTCAGCGTGAGCATCT
GGCTGAGTGACGAGGCGGTGGCCGGCTGCCGGGTGGCCGCGGTGTTCATGCAGTACGGCG
TCGTGGCCAACTACTGCTGGCTGCTGGTGGAGGGCGTGTACCTGCACAGCCTGCTGCGCC
AGGCCACCATCCCCGAGAGGAGCTGCTTCCCCCTCTACTTGGCCATCGGCTGGGGTGCCC
CCATGCTATTCGTCATCCCCTGGGCGGTGGTCAAGTGTCTGTTTGAGAACATCCAGTGCT
GGACCAGCAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGTTTGCGCGCTGCTGGCGCGGGGCGCGGGCGCGGAGCTGGCGCCGACCCTGATCCG
GCAGCGCCGCGGAGACGGGCGGCCGCCAGCCCCCGGCCCGAGCGCGCGGAAGACGGCGGG
GGGCGCTGAGCGACCGGAGCCGCGCGCGGCGAGCCCTTGGGCCGGACACCGAGGGCATGT
TCCCGGCCGCGGGCCGAAGGCGGGAGCGCGGGACCGGCCGGCGCCGACTCCTAAGACCCG
AGGCATGCGTGCGCCACGAGGACCTCTCTGCCCAGCACTCAACCCCAGCCAGATGTGGGG
GGCAGCTGCCCGGAGGCATGCCCCCCGCCCGGCTGCGCCACCCCCACCTCCTCCTGCTGC
TGCTGCTGGCCTGCCAGCCACAGGCCCCCGCCGCGCAGGCGATGGACTTCCTCTTCCAGA
AGTGGAAGCTCTACGGCGACCAGTGTCTCCGCAACCTGAGCCTGCTGCCCCCGCCCACCG
AGCTGGTCTGTAATAGAACCTTCGACAAGTACTCCTGCTGGCCCGACACCCCTCCCAACA
CCACGGCCAACATCTCCTGCCCCTGGTACCTGCCCTGGTACCACAAAGTGCAGCACCGGC
TCGTCTTCAAACGGTGTGGGCCCGATGGGCAGTGGGTGCGTGGGCCGCGGGGGCAGCCGT
GGCGCAACGCCTCCCAGTGCCAGGTGGACGACGAGGAGCTTGGGGTCCAGAGGGAGGTGG
CTGAGATGTACAGCAGCTTCCAGGCGATGTACACGGCCGGCTACTCCCTGTCCCTCGCAG
CCCTGCTCCTGGCCCTGGCCATCCTGCTGGGCCTCAGCAAGCTGCACTGCACCCGAAACT
ACATCCACGCGAACCTGCTTGCGTCCTTCGTGCTCAGGGCCAGCTCCGTGCTGGCCCTCG
ACGCGCTCCTCAAGACCCGCTACAGCCAGCGGCTTGGGGACGACCTCAGCGTGAGCATCT
GGCTGAGTGACGAGGCGGTGGCCGGCTGCCGGGTGGCCGCGGTGTTCATGCAGTACGGCG
TCGTGGCCAACTACTGCTGGCTGCTGGTGGAGGGCGTGTACCTGCACAGCCTGCTGCGCC
AGGCCACCATCCCCGAGAGGAGCTGCTTCCCCCTCTACTTGGCCATCGGCTGGGGTGCCC
CCATGCTATTCGTCATCCCCTGGGCGGTGGTCAAGTGTCTGTTTGAGAACATCCAGTGCT
GGACCAGCAATG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61856460|ref|XP_593456.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61856460|ref|XP_593456.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               708-826, + strand, RNAz p=0.559007

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               708-826, + strand, RNAz p=0.559007

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               19-232, gnl|bosTau2|chr19 (45341242-45341469)
               

               
               19-232, gnl|Hg17|chr17_random (1860134-1860401)
               

               
               19-232, gnl|Mm7|chr11 (120639749-120639986)
               


               
               465-599, gnl|bosTau2|chr19 (45346593-45346729)
               

               
               465-599, gnl|Hg17|chr17_random (1866864-1867013)
               

               
               465-599, gnl|Mm7|chr11 (120645071-120645223)
               


               
               708-834, gnl|bosTau2|chr19 (45347016-45347141)
               

               
               708-834, gnl|Hg17|chr17_random (1867297-1867415)
               

               
               708-834, gnl|Mm7|chr11 (120645504-120645641)
               


               
               967-1137, gnl|bosTau2|chr19 (45347457-45347627)
               

               
               967-1137, gnl|Hg17|chr17_random (1867724-1867893)
               

               
               967-1137, gnl|Mm7|chr11 (120645932-120646102)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-232, gnl|bosTau2|chr19 (45341242-45341469)
               

               
               19-232, gnl|Hg17|chr17_random (1860134-1860401)
               

               
               19-232, gnl|Mm7|chr11 (120639749-120639986)
               


               
               465-599, gnl|bosTau2|chr19 (45346593-45346729)
               

               
               465-599, gnl|Hg17|chr17_random (1866864-1867013)
               

               
               465-599, gnl|Mm7|chr11 (120645071-120645223)
               


               
               708-834, gnl|bosTau2|chr19 (45347016-45347141)
               

               
               708-834, gnl|Hg17|chr17_random (1867297-1867415)
               

               
               708-834, gnl|Mm7|chr11 (120645504-120645641)
               


               
               967-1137, gnl|bosTau2|chr19 (45347457-45347627)
               

               
               967-1137, gnl|Hg17|chr17_random (1867724-1867893)
               

               
               967-1137, gnl|Mm7|chr11 (120645932-120646102)

	19-232, gnl\|bosTau2\|chr19 (45341242-45341469)
	19-232, gnl\|Hg17\|chr17_random (1860134-1860401)
	19-232, gnl\|Mm7\|chr11 (120639749-120639986)

	465-599, gnl\|bosTau2\|chr19 (45346593-45346729)
	465-599, gnl\|Hg17\|chr17_random (1866864-1867013)
	465-599, gnl\|Mm7\|chr11 (120645071-120645223)

	708-834, gnl\|bosTau2\|chr19 (45347016-45347141)
	708-834, gnl\|Hg17\|chr17_random (1867297-1867415)
	708-834, gnl\|Mm7\|chr11 (120645504-120645641)

	967-1137, gnl\|bosTau2\|chr19 (45347457-45347627)
	967-1137, gnl\|Hg17\|chr17_random (1867724-1867893)
	967-1137, gnl\|Mm7\|chr11 (120645932-120646102)