Ss1.1-Liv1-LVR010058F12.5
|
ACACTGACCACAGACCACGCCAGAGGCTCTTCTGTGCCTGGGGAAGAGCCAGGATGGCCG
GTCCCCCCACCACCCATCAGCCCCTCATGGAGATGCTGCGAGGTGCCTGGCTCTGCGGGG
CCTGCCTCCTGCTCCTGGCCAGGCCCACCCAGCCCTGCCCCGTGGGGTGTGATTGCTTCA
TCCACGAGGTGTTCTGCTCCGAGGAGGAGCTGGCCGCCATCCCGCCGGACATCCCGCCAC
ACGCCACAGACATCATCTTTGTGGAGACCTCGTTCACCACGGTGGGAGCCAGGGCCTTCA
GTGGCAGCCCCAACCTGACCAAAGTGGTCTTCCTCAACACCCAGGTGTGCCACTTCGGGC
CAGATGCCTTCGGGGGGCTGCCCAGGCTCCAGGACCTCGAGATCACCGGTGGTGCCTTCT
CCAATCTCAGCTCCAACATCTTCTCCAACCTGGCTTCCCTCGTCAAGTTCACCCTCAACT
TCAACAAGCTGGAAGCTCTGCCCGAGGGCCTCTTCGGGCACATGGATGCCCTGGAGTCCC
TCCAGCTGCAGGGCAACCAGCTCCAGACCCTACCCAGGCATCTCTTCCAGCCTCTGAGAC
ATCTGAAGACTCTCAACCTCGCTCAGAACCTCCTGGCCCAGCTGCCCGAGGAACTGTTCC
ACCCGCTTGGCAGCCTGGAAACCCTGAGGCTGAGCAACAATGTGCTGGCCAGCCTGCCCA
AGGGGGTGTTCGGCAAGCTGAGTAGCTTGCAGGAACTCTTCCTGGATGGCAACTCCATCT
CTGAGCTGCCCCCGGAAGTGTTCGCGCAGCTCCCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACACTGACCACAGACCACGCCAGAGGCTCTTCTGTGCCTGGGGAAGAGCCAGGATGGCCG
GTCCCCCCACCACCCATCAGCCCCTCATGGAGATGCTGCGAGGTGCCTGGCTCTGCGGGG
CCTGCCTCCTGCTCCTGGCCAGGCCCACCCAGCCCTGCCCCGTGGGGTGTGATTGCTTCA
TCCACGAGGTGTTCTGCTCCGAGGAGGAGCTGGCCGCCATCCCGCCGGACATCCCGCCAC
ACGCCACAGACATCATCTTTGTGGAGACCTCGTTCACCACGGTGGGAGCCAGGGCCTTCA
GTGGCAGCCCCAACCTGACCAAAGTGGTCTTCCTCAACACCCAGGTGTGCCACTTCGGGC
CAGATGCCTTCGGGGGGCTGCCCAGGCTCCAGGACCTCGAGATCACCGGTGGTGCCTTCT
CCAATCTCAGCTCCAACATCTTCTCCAACCTGGCTTCCCTCGTCAAGTTCACCCTCAACT
TCAACAAGCTGGAAGCTCTGCCCGAGGGCCTCTTCGGGCACATGGATGCCCTGGAGTCCC
TCCAGCTGCAGGGCAACCAGCTCCAGACCCTACCCAGGCATCTCTTCCAGCCTCTGAGAC
ATCTGAAGACTCTCAACCTCGCTCAGAACCTCCTGGCCCAGCTGCCCGAGGAACTGTTCC
ACCCGCTTGGCAGCCTGGAAACCCTGAGGCTGAGCAACAATGTGCTGGCCAGCCTGCCCA
AGGGGGTGTTCGGCAAGCTGAGTAGCTTGCAGGAACTCTTCCTGGATGGCAACTCCATCT
CTGAGCTGCCCCCGGAAGTGTTCGCGCAGCTCCCCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
550-668, - strand, RNAmicro p=0.990414 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
550-668, - strand, RNAmicro p=0.990414 |
|
701-754, BP139326 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP139326.1|), blast E-value=2e-18, identity=98.15% |
|
701-792, BP442518 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP442518.1|), blast E-value=2.00386e-43, identity=100% |
|
701-785, BP443878 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP443878.1|), blast E-value=3e-39, identity=100% |
|
701-815, BP446278 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP446278.1|), blast E-value=0, identity=100% |
|
701-805, CJ000051 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ000051.1|), blast E-value=0, identity=100% |
|
701-815, CJ006297 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ006297.1|), blast E-value=0, identity=100% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
701-754, BP139326 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP139326.1|), blast E-value=2e-18, identity=98.15% |
|
701-792, BP442518 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP442518.1|), blast E-value=2.00386e-43, identity=100% |
|
701-785, BP443878 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP443878.1|), blast E-value=3e-39, identity=100% |
|
701-815, BP446278 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP446278.1|), blast E-value=0, identity=100% |
|
701-805, CJ000051 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ000051.1|), blast E-value=0, identity=100% |
|
701-815, CJ006297 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ006297.1|), blast E-value=0, identity=100% |
|
89-815, gnl|bosTau2|chr1 (45256768-45256042) |
|
89-815, gnl|canFam2|chr33 (34406813-34406257) |
|
89-815, gnl|danRer3|chrNA (145656335-145655794) |
|
89-815, gnl|dasNov1|scaffold_68578 (7026-6470) |
|
89-815, gnl|echTel1|scaffold_256051 (7084-7640) |
|
89-815, gnl|fr1|chrUn (152952894-152953447) |
|
89-815, gnl|galGal2|chr9 (12322564-12322008) |
|
89-815, gnl|hg17|chr3 (195544375-195544931) |
|
89-815, gnl|Hg17|chr3 (195545138-195544412) |
|
89-815, gnl|loxAfr1|scaffold_26120 (608-52) |
|
89-815, gnl|mm7|chr16 (29933094-29933650) |
|
89-815, gnl|Mm7|chr16 (29933857-29933131) |
|
89-815, gnl|monDom2|scaffold_850 (11030-11628) |
|
89-815, gnl|oryCun1|scaffold_81269 (9708-10264) |
|
89-815, gnl|panTro1|chr2 (199670164-199670720) |
|
89-815, gnl|rheMac2|chr2 (186561859-186562415) |
|
89-815, gnl|rn3|chr11 (72449775-72449219) |
|
89-815, gnl|tetNig1|chr15 (3108301-3108861) |
|
89-815, gnl|xenTro1|scaffold_2088 (17345-17901) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
89-815, gnl|bosTau2|chr1 (45256768-45256042) |
|
89-815, gnl|canFam2|chr33 (34406813-34406257) |
|
89-815, gnl|danRer3|chrNA (145656335-145655794) |
|
89-815, gnl|dasNov1|scaffold_68578 (7026-6470) |
|
89-815, gnl|echTel1|scaffold_256051 (7084-7640) |
|
89-815, gnl|fr1|chrUn (152952894-152953447) |
|
89-815, gnl|galGal2|chr9 (12322564-12322008) |
|
89-815, gnl|hg17|chr3 (195544375-195544931) |
|
89-815, gnl|Hg17|chr3 (195545138-195544412) |
|
89-815, gnl|loxAfr1|scaffold_26120 (608-52) |
|
89-815, gnl|mm7|chr16 (29933094-29933650) |
|
89-815, gnl|Mm7|chr16 (29933857-29933131) |
|
89-815, gnl|monDom2|scaffold_850 (11030-11628) |
|
89-815, gnl|oryCun1|scaffold_81269 (9708-10264) |
|
89-815, gnl|panTro1|chr2 (199670164-199670720) |
|
89-815, gnl|rheMac2|chr2 (186561859-186562415) |
|
89-815, gnl|rn3|chr11 (72449775-72449219) |
|
89-815, gnl|tetNig1|chr15 (3108301-3108861) |
|
89-815, gnl|xenTro1|scaffold_2088 (17345-17901) |
