Non-Coding RNA Search

Ss1.1-Liv1-LVR010066B09.5

Sequence:


               
               ATTCGGACGATGGCCTGAGGACGATGGCCGGAGCCTGGGCCTGGGCTCTGGAAACCAGCG
GGAGTGGGACCTGCATCCCCCTCTCCTCTCGTGCCACAGCTGCCCCTGTCCCCACTTCAT
GCCACAGCGGGATCCGGCCACTTCATGGGCGCCTCCTGCCCACGGCCTCTCTCACCCTGG
CCCCTGCAGAGCCCGGCGTCTTGTCCCAGGCGTACCTAGCTGAGGGGGGCAATGCGGAGG
CAGGGCTCTGCCCCAGACCCGGAGTGGCGGGGCTGGGGGCTCAGCACCACCGCCCACTGG
CCTCTCCCCTCCCTGTGCCTTAGTTTCTTCATCTGCCACTGAAGGGGTTCGCCTCCGATG
AGAAGGCCCTTTCTGACGTTCTGGGCTGGCTCTGTCTCCAGATCACAGCCCTCTGGTGCT
TTTTCTTTGAAGGCAGGCTGGGTCTGGTGCCCCCTGTCCAGGCCTCAGACTCTGGGGCAG
GGAGGGGGAATCGCAGCCCGAGCCCTCCCTTCACCTGCCCCTCCCCCCAGCAATGGCCTG
AGCCCCCATGGCTGCCCCTCAGGACCTGGACATCGCTGTGTGGCTGGCCGCGGTGCACCT
GGAGCAGTATGCAGACGCGTTCCGGCGGCAAGGCCTGGCTACAGCGGGTGCAGCCCGGGG
CCTGGGCCACGAGGAGCTGAGGCAGTTGGGCATCAGCGCCACAGGGCACCGGAAGCGCAT
TCTGCGCCTGCTGCAGGCAGGCGCTGCAGAGGGCTCCCCAGATCCCCGGCCGGACAGTGC
CATGGAGCCATCACCCAGCCCAGCCGCCCAAGCCCAGCCCGCCAAGCCTGTGCCTAAGCC
CAGGACGGTATTCGGTGGGCTCAGTGGCTCCACCCCCACCCAGAGGCCTGGCTTGACTTC
GGCCCTCTGGAGGCCAGAAGCAGCCGGGAGCGCAGAGTCCAGCCCGAAGTCCCCCTCTGT
CCCCGCGTTCTCCGCTGAGCAGTCTTCAGCCTTGAACACCGTGGAGATGATGCCCAATGC
CATCTACTTTGGCCTGGACCTGAGAGGCGGGGCACAGGCGGCTCAGGACACGGCTCCAGA
CAGCGCCCAGGCAGCTGCCCCCACCCCTGCCCTCAGGCCCGCAACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGGACGATGGCCTGAGGACGATGGCCGGAGCCTGGGCCTGGGCTCTGGAAACCAGCG
GGAGTGGGACCTGCATCCCCCTCTCCTCTCGTGCCACAGCTGCCCCTGTCCCCACTTCAT
GCCACAGCGGGATCCGGCCACTTCATGGGCGCCTCCTGCCCACGGCCTCTCTCACCCTGG
CCCCTGCAGAGCCCGGCGTCTTGTCCCAGGCGTACCTAGCTGAGGGGGGCAATGCGGAGG
CAGGGCTCTGCCCCAGACCCGGAGTGGCGGGGCTGGGGGCTCAGCACCACCGCCCACTGG
CCTCTCCCCTCCCTGTGCCTTAGTTTCTTCATCTGCCACTGAAGGGGTTCGCCTCCGATG
AGAAGGCCCTTTCTGACGTTCTGGGCTGGCTCTGTCTCCAGATCACAGCCCTCTGGTGCT
TTTTCTTTGAAGGCAGGCTGGGTCTGGTGCCCCCTGTCCAGGCCTCAGACTCTGGGGCAG
GGAGGGGGAATCGCAGCCCGAGCCCTCCCTTCACCTGCCCCTCCCCCCAGCAATGGCCTG
AGCCCCCATGGCTGCCCCTCAGGACCTGGACATCGCTGTGTGGCTGGCCGCGGTGCACCT
GGAGCAGTATGCAGACGCGTTCCGGCGGCAAGGCCTGGCTACAGCGGGTGCAGCCCGGGG
CCTGGGCCACGAGGAGCTGAGGCAGTTGGGCATCAGCGCCACAGGGCACCGGAAGCGCAT
TCTGCGCCTGCTGCAGGCAGGCGCTGCAGAGGGCTCCCCAGATCCCCGGCCGGACAGTGC
CATGGAGCCATCACCCAGCCCAGCCGCCCAAGCCCAGCCCGCCAAGCCTGTGCCTAAGCC
CAGGACGGTATTCGGTGGGCTCAGTGGCTCCACCCCCACCCAGAGGCCTGGCTTGACTTC
GGCCCTCTGGAGGCCAGAAGCAGCCGGGAGCGCAGAGTCCAGCCCGAAGTCCCCCTCTGT
CCCCGCGTTCTCCGCTGAGCAGTCTTCAGCCTTGAACACCGTGGAGATGATGCCCAATGC
CATCTACTTTGGCCTGGACCTGAGAGGCGGGGCACAGGCGGCTCAGGACACGGCTCCAGA
CAGCGCCCAGGCAGCTGCCCCCACCCCTGCCCTCAGGCCCGCAACAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61811397|ref|XP_609745.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61811397|ref|XP_609745.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               379-535, - strand, RNAz p=0.928564
               

               
               776-967, - strand, RNAz p=0.946793

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               379-535, - strand, RNAz p=0.928564
               

               
               776-967, - strand, RNAz p=0.946793

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               300-1070, gnl|bosTau2|chr7 (35520343-35519564)
               

               
               300-1070, gnl|Hg17|chr5 (141040486-141039715)
               

               
               300-1070, gnl|Mm7|chr18 (38373521-38372788)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               300-1070, gnl|bosTau2|chr7 (35520343-35519564)
               

               
               300-1070, gnl|Hg17|chr5 (141040486-141039715)
               

               
               300-1070, gnl|Mm7|chr18 (38373521-38372788)

	379-535, - strand, RNAz p=0.928564
	776-967, - strand, RNAz p=0.946793

	300-1070, gnl\|bosTau2\|chr7 (35520343-35519564)
	300-1070, gnl\|Hg17\|chr5 (141040486-141039715)
	300-1070, gnl\|Mm7\|chr18 (38373521-38372788)