Non-Coding RNA Search

Ss1.1-Liv1-LVR010067D04.5

Sequence:


               
               ATTTTTTTCAATCCACAGAATAGTAAATGACAACCACGTCATTTCATTTCACTGCAACAG
CGCCACCTGCTGCTGGCCAAGCACAGATAAACGGAGGTGTTAAAAATAAATCAAAGAGGT
TTAAGAAACCAGGAAACTAACCAACACCTCTGAGGCGCTATACGTCTTGCAGACATGGTC
TACACCACTCCTCTTTGAGACCTCAAAGATCTTCATACTCATACTTACTGTCACATCAGT
CTCCCGCACTGAGGAAAGAAACAAGCCTCTTTATCCGCTAGAGCAGTAAGATCCTGTGAC
CCTACACAGGACTGAGAGCACATCAGAGGAATACCACTGCCCTGTGTGTGCTGGGGCCGC
CTGGGGCTCAGGTCCCCCTCAACATTTTTTAAAGATTTTTATGTTTCCCATTAGAGTTGA
TTTATTTTTTTTTAGAGTTGATTTATAATGCTCTGTCAATTTCTGCTGTACAACAAAGTG
ACCCAGTCATATGTATCTATGCATTCTTTTTCTCACATTGTCTTCCATCATGTTCTATCA
CAAGCGACTGGATAGAGTTCCCCCTCAACATTTTAATGAGATCTTGCTGAAGGCCTGTGC
CTTACTTTAAACCAGTATAACGTTTTCTCTTTCCTGCCAAGGCCTTAGGGCAATGAGCCT
TTTCAGCACTGAGATGATGGCAGCCATGCTTCCTTTACGTCAAGGTGGAGCAGGGAGGGC
TCGTCTGCCTCTGCAGGGGCCACTCAGGAGGTCATGCTTCTGGTAAATCCTTCCTAGCTG
AGTCTACAGACCCGCTTGTCAGTGATTCATCCGTTCCCTCTGGCTTCTCTTCCCAGTAGC
GCACCTCCCGCTAGCCAGAGCCAACTCCAGGCTCAGAAGCCAGCACCTGCTTGCTGTAGG
TAGCAAAGTCTAGCTGCTGCTAAACAAGCTCGAATCTGGTGAGGTGCTGAACCAGTGAGG
GGGGGAGACAGATGCCCCGAAACGACATGGCATCCAGCTGGCTTAACATGTTCCCTCAGC
ATGAACAGCTGCCAACTAGCCCTGGAAACACGTGGTCAGATTCAGCCCAACTCTCTGGTT
TAATTAATCATTTGACGCTATTATGAAGCTCCTTGATTATACATTCACCCAGTGAGTAAC
AAGCAGACAAGAATGTGAGAAGGAGAAGCAGTGATGCTAAGAGATTACCTCCAATTAATT
TGTTCATTGGTTCTTTGATTCATTCTGCAAGACACCCCTCTGGGTGATGGGGCACGGCCT
TAAACAAGGCTCATAGATTCCCTGCCCTTGTGGTGCTTAAAGGAAAGGGATTGAACCTGT
GTCCTTTGGGATGCTGGTCACATTCATTCTCCTGTCCCAAGGAAGGACCAGGCCCCACTT
TCCCTGACAAGCAGTATATATGTTCTCTCTTGCTTTTAATGGGCAAACTCCAGGCTATGG
ATAAGTTTATGACAAAAGCAACCGTGTTCAAAAAGTCTCTCTGTAGAGTTATACTTTCAT
CAAATCTTTGTTTATAGTTGTAGAGCTATAAATCATTTTAATACTCAGTAATTTTGTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTCAATCCACAGAATAGTAAATGACAACCACGTCATTTCATTTCACTGCAACAG
CGCCACCTGCTGCTGGCCAAGCACAGATAAACGGAGGTGTTAAAAATAAATCAAAGAGGT
TTAAGAAACCAGGAAACTAACCAACACCTCTGAGGCGCTATACGTCTTGCAGACATGGTC
TACACCACTCCTCTTTGAGACCTCAAAGATCTTCATACTCATACTTACTGTCACATCAGT
CTCCCGCACTGAGGAAAGAAACAAGCCTCTTTATCCGCTAGAGCAGTAAGATCCTGTGAC
CCTACACAGGACTGAGAGCACATCAGAGGAATACCACTGCCCTGTGTGTGCTGGGGCCGC
CTGGGGCTCAGGTCCCCCTCAACATTTTTTAAAGATTTTTATGTTTCCCATTAGAGTTGA
TTTATTTTTTTTTAGAGTTGATTTATAATGCTCTGTCAATTTCTGCTGTACAACAAAGTG
ACCCAGTCATATGTATCTATGCATTCTTTTTCTCACATTGTCTTCCATCATGTTCTATCA
CAAGCGACTGGATAGAGTTCCCCCTCAACATTTTAATGAGATCTTGCTGAAGGCCTGTGC
CTTACTTTAAACCAGTATAACGTTTTCTCTTTCCTGCCAAGGCCTTAGGGCAATGAGCCT
TTTCAGCACTGAGATGATGGCAGCCATGCTTCCTTTACGTCAAGGTGGAGCAGGGAGGGC
TCGTCTGCCTCTGCAGGGGCCACTCAGGAGGTCATGCTTCTGGTAAATCCTTCCTAGCTG
AGTCTACAGACCCGCTTGTCAGTGATTCATCCGTTCCCTCTGGCTTCTCTTCCCAGTAGC
GCACCTCCCGCTAGCCAGAGCCAACTCCAGGCTCAGAAGCCAGCACCTGCTTGCTGTAGG
TAGCAAAGTCTAGCTGCTGCTAAACAAGCTCGAATCTGGTGAGGTGCTGAACCAGTGAGG
GGGGGAGACAGATGCCCCGAAACGACATGGCATCCAGCTGGCTTAACATGTTCCCTCAGC
ATGAACAGCTGCCAACTAGCCCTGGAAACACGTGGTCAGATTCAGCCCAACTCTCTGGTT
TAATTAATCATTTGACGCTATTATGAAGCTCCTTGATTATACATTCACCCAGTGAGTAAC
AAGCAGACAAGAATGTGAGAAGGAGAAGCAGTGATGCTAAGAGATTACCTCCAATTAATT
TGTTCATTGGTTCTTTGATTCATTCTGCAAGACACCCCTCTGGGTGATGGGGCACGGCCT
TAAACAAGGCTCATAGATTCCCTGCCCTTGTGGTGCTTAAAGGAAAGGGATTGAACCTGT
GTCCTTTGGGATGCTGGTCACATTCATTCTCCTGTCCCAAGGAAGGACCAGGCCCCACTT
TCCCTGACAAGCAGTATATATGTTCTCTCTTGCTTTTAATGGGCAAACTCCAGGCTATGG
ATAAGTTTATGACAAAAGCAACCGTGTTCAAAAAGTCTCTCTGTAGAGTTATACTTTCAT
CAAATCTTTGTTTATAGTTGTAGAGCTATAAATCATTTTAATACTCAGTAATTTTGTATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               81-226, + strand, RNAz p=0.999026
               

               
               862-1012, - strand, RNAz p=0.968314

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-226, + strand, RNAz p=0.999026
               

               
               862-1012, - strand, RNAz p=0.968314

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               4-387, gnl|bosTau2|chr21 (16089391-16089000)
               

               
               4-387, gnl|Hg17|chr15 (87522098-87522512)
               


               
               561-1108, gnl|bosTau2|chr21 (16089012-16088460)
               

               
               561-1108, gnl|Hg17|chr15 (87522500-87523020)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-387, gnl|bosTau2|chr21 (16089391-16089000)
               

               
               4-387, gnl|Hg17|chr15 (87522098-87522512)
               


               
               561-1108, gnl|bosTau2|chr21 (16089012-16088460)
               

               
               561-1108, gnl|Hg17|chr15 (87522500-87523020)

	81-226, + strand, RNAz p=0.999026
	862-1012, - strand, RNAz p=0.968314

	4-387, gnl\|bosTau2\|chr21 (16089391-16089000)
	4-387, gnl\|Hg17\|chr15 (87522098-87522512)

	561-1108, gnl\|bosTau2\|chr21 (16089012-16088460)
	561-1108, gnl\|Hg17\|chr15 (87522500-87523020)