Non-Coding RNA Search

Ss1.1-Liv1-LVR010076G12.5

Sequence:


               
               CTGCGCCTTGCCCTCCAGCTCAGAGATGACCTGCGCCAGCCGGGCAAGCTCCCCGTCGCC
CCTGGTCTTGTACTTCTCCCTGCCCTCTGTGACCTCCTGCTCCAGCTTCGCCAGCTGGTC
CAGCAGGTGCTGCTCCCGCTCCCACAGGAACTGGTGGCCCTGTTCAAATGCAGCCAGGAT
GCGCTGCCTCTGGTCCTGGAGCTTCTTCAGCTCAGCCAGGATATCAGCTTCTCCCTTGGC
CTGAAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTT
CTCCCTGTGGGGCTGGGCGGCCTTCTCCACCAGGACGGCCGTGTGGGGCCTGTGCTCCCG
GGACTCGCGGCACATGACGCACAGCAGCTTGCCATCGTCCTCGCAGTAGTAGTGCAGTTT
CTCCTGGTGTCGCTCGCACAGCCTTGTGTCCTGCTGCTCCCGGGCCACCTCCCCCGGCTG
CCGGCCCGTGTCCACCTTCAGCCGCTCGATGTTCTCCACCAGGCTGGCCAGCTGCCACAC
AGGCCTGATATTCTCCTTTGTTAAAGGTTTCTTGCACAGGGGGCAGACGGGGCGGCCCCC
CGAGACAGGGTGGATGTCGGTGGTACAGCTGCGGCAGAAGACGTGACCGCAGTCAATGGT
CACTGGGTCCCGCAGGTAATCAAGGCAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCG
CAGTGGCGCTGACGTGGCCATGGTGTCCTGAGCTCAGAGGGGTCCCTGTTCACTGGCGGG
GACTTCTCCTCCAGCCCGCAGCTCCCGGCTACGAAACCTGGGCCAGGGTCGCTTCTTCCC
CGCGGCGGTCAGTTCCGGGTCGGGCTGCTCTGCCGGCACCCAGCGCAACCGCGAGTCCCG
GCCGGGTAATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCGCCTTGCCCTCCAGCTCAGAGATGACCTGCGCCAGCCGGGCAAGCTCCCCGTCGCC
CCTGGTCTTGTACTTCTCCCTGCCCTCTGTGACCTCCTGCTCCAGCTTCGCCAGCTGGTC
CAGCAGGTGCTGCTCCCGCTCCCACAGGAACTGGTGGCCCTGTTCAAATGCAGCCAGGAT
GCGCTGCCTCTGGTCCTGGAGCTTCTTCAGCTCAGCCAGGATATCAGCTTCTCCCTTGGC
CTGAAAGCCCTGAATTTTGTCTCTGTCTCTCCTTAGGGTACTCAGGTGGTTCAGGATTTT
CTCCCTGTGGGGCTGGGCGGCCTTCTCCACCAGGACGGCCGTGTGGGGCCTGTGCTCCCG
GGACTCGCGGCACATGACGCACAGCAGCTTGCCATCGTCCTCGCAGTAGTAGTGCAGTTT
CTCCTGGTGTCGCTCGCACAGCCTTGTGTCCTGCTGCTCCCGGGCCACCTCCCCCGGCTG
CCGGCCCGTGTCCACCTTCAGCCGCTCGATGTTCTCCACCAGGCTGGCCAGCTGCCACAC
AGGCCTGATATTCTCCTTTGTTAAAGGTTTCTTGCACAGGGGGCAGACGGGGCGGCCCCC
CGAGACAGGGTGGATGTCGGTGGTACAGCTGCGGCAGAAGACGTGACCGCAGTCAATGGT
CACTGGGTCCCGCAGGTAATCAAGGCAGATGGAGCAGGTCACCTCCTCTTCCAGGCTCCG
CAGTGGCGCTGACGTGGCCATGGTGTCCTGAGCTCAGAGGGGTCCCTGTTCACTGGCGGG
GACTTCTCCTCCAGCCCGCAGCTCCCGGCTACGAAACCTGGGCCAGGGTCGCTTCTTCCC
CGCGGCGGTCAGTTCCGGGTCGGGCTGCTCTGCCGGCACCCAGCGCAACCGCGAGTCCCG
GCCGGGTAATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15147232|ref|NP_109623.4|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15147232|ref|NP_109623.4|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               94-211, - strand, RNAz p=0.962191

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-211, - strand, RNAz p=0.962191

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-211, gnl|bosTau2|chr23 (23865570-23865360)
               

               
               1-211, gnl|Hg17|chr6 (30272296-30272506)
               

               
               1-211, gnl|Mm7|chr17 (35004520-35004310)
               


               
               303-792, gnl|bosTau2|chr23 (23863837-23863348)
               

               
               303-792, gnl|Hg17|chr6 (30274421-30274910)
               

               
               303-792, gnl|Mm7|chr17 (35002908-35002439)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-211, gnl|bosTau2|chr23 (23865570-23865360)
               

               
               1-211, gnl|Hg17|chr6 (30272296-30272506)
               

               
               1-211, gnl|Mm7|chr17 (35004520-35004310)
               


               
               303-792, gnl|bosTau2|chr23 (23863837-23863348)
               

               
               303-792, gnl|Hg17|chr6 (30274421-30274910)
               

               
               303-792, gnl|Mm7|chr17 (35002908-35002439)

	1-211, gnl\|bosTau2\|chr23 (23865570-23865360)
	1-211, gnl\|Hg17\|chr6 (30272296-30272506)
	1-211, gnl\|Mm7\|chr17 (35004520-35004310)

	303-792, gnl\|bosTau2\|chr23 (23863837-23863348)
	303-792, gnl\|Hg17\|chr6 (30274421-30274910)
	303-792, gnl\|Mm7\|chr17 (35002908-35002439)