Non-Coding RNA Search

Ss1.1-Liv1-LVR010076H05.5

Sequence:


               
               ATGGGTGGGAACAGAGCGCCCGGGCCGCAGCGCCGCGCGGGTCCTGGAGCCCAACGCCTC
TCCTGCCCTGGCGGTCGCCCGCTGCTCCTCCGCGGCTGCCTGTTAGTCACCTCAGACCCG
CCTGCTCGAACCTGCTGACATGGCCGAGCCTGCGGATGACGAGCTGTCCTCCCGGACGGG
GAGTCCAGACGGGGAAGGTCTGGTCTCTGAGGACAGATCCCTGCTCCATCAGAGGCTGGC
CGTCAGGGAGCTCGTCGACACCGAGGCCTCCTATTTGCATGTGCTCCAGCTCTGTGCCTC
AGACATCAGGGGCCGCCTGCAGCAGCTGCCTCAGGAAGATCTGGATGTCCTGTTCTCGAA
CATCGATGATGTCATCAAGGTGAACAGCAGGCTGCTCCGAGATCTGCAGGACGCGGCCTC
CAGGGGAGAGGAGCAGGTGCGGCTGGTCGGTGACGTGTTCCTGGAATTCCAAGAGGAGCT
GGAGCAAGTCTATAAGGTCTACTGTGCCAGCTACGAACAGGCCTTGCTGCTGGTGGAGAA
CTACCAGAAGGATCCAGAGCTGCAGCGGGGGATCCAGCGCACCATCGAGGCGGTGCTGTG
AGTACTGGGACCCCCCGGACTCGGAGGTCAGGGGCTGTTCGGGTCGCCCCCACCTGCTGC
TCACACCGCTTCAGGCACGTCCTGGTCAGTTAAGCTGGGCTGTGCTGTGGAGACAACCCC
AGCTCTCAGAGGTTTCAAATTGCACGGTTTCCACCCTACTTATTCTCCCTCGTGGGTTAA
CTTGGGGCTTCTGTGTCATCCTCACCCCAGGACCCAAGTGGACAGCAAGCACTCTCTGGA
ACACTGCCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGGTGGGAACAGAGCGCCCGGGCCGCAGCGCCGCGCGGGTCCTGGAGCCCAACGCCTC
TCCTGCCCTGGCGGTCGCCCGCTGCTCCTCCGCGGCTGCCTGTTAGTCACCTCAGACCCG
CCTGCTCGAACCTGCTGACATGGCCGAGCCTGCGGATGACGAGCTGTCCTCCCGGACGGG
GAGTCCAGACGGGGAAGGTCTGGTCTCTGAGGACAGATCCCTGCTCCATCAGAGGCTGGC
CGTCAGGGAGCTCGTCGACACCGAGGCCTCCTATTTGCATGTGCTCCAGCTCTGTGCCTC
AGACATCAGGGGCCGCCTGCAGCAGCTGCCTCAGGAAGATCTGGATGTCCTGTTCTCGAA
CATCGATGATGTCATCAAGGTGAACAGCAGGCTGCTCCGAGATCTGCAGGACGCGGCCTC
CAGGGGAGAGGAGCAGGTGCGGCTGGTCGGTGACGTGTTCCTGGAATTCCAAGAGGAGCT
GGAGCAAGTCTATAAGGTCTACTGTGCCAGCTACGAACAGGCCTTGCTGCTGGTGGAGAA
CTACCAGAAGGATCCAGAGCTGCAGCGGGGGATCCAGCGCACCATCGAGGCGGTGCTGTG
AGTACTGGGACCCCCCGGACTCGGAGGTCAGGGGCTGTTCGGGTCGCCCCCACCTGCTGC
TCACACCGCTTCAGGCACGTCCTGGTCAGTTAAGCTGGGCTGTGCTGTGGAGACAACCCC
AGCTCTCAGAGGTTTCAAATTGCACGGTTTCCACCCTACTTATTCTCCCTCGTGGGTTAA
CTTGGGGCTTCTGTGTCATCCTCACCCCAGGACCCAAGTGGACAGCAAGCACTCTCTGGA
ACACTGCCAGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|51770941|ref|XP_148875.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51770941|ref|XP_148875.3|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               128-246, + strand, RNAz p=0.546136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-246, + strand, RNAz p=0.546136

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               128-331, gnl|bosTau2|chr7 (41976618-41976415)
               

               
               128-331, gnl|Hg17|chr5 (148957514-148957717)
               

               
               128-331, gnl|Mm7|chr18 (61913443-61913240)
               


               
               449-843, gnl|bosTau2|chr7 (41965678-41965266)
               

               
               449-843, gnl|Hg17|chr5 (148969303-148969749)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-331, gnl|bosTau2|chr7 (41976618-41976415)
               

               
               128-331, gnl|Hg17|chr5 (148957514-148957717)
               

               
               128-331, gnl|Mm7|chr18 (61913443-61913240)
               


               
               449-843, gnl|bosTau2|chr7 (41965678-41965266)
               

               
               449-843, gnl|Hg17|chr5 (148969303-148969749)

	128-331, gnl\|bosTau2\|chr7 (41976618-41976415)
	128-331, gnl\|Hg17\|chr5 (148957514-148957717)
	128-331, gnl\|Mm7\|chr18 (61913443-61913240)

	449-843, gnl\|bosTau2\|chr7 (41965678-41965266)
	449-843, gnl\|Hg17\|chr5 (148969303-148969749)