Non-Coding RNA Search

Ss1.1-Liv1-LVR010097C01.5

Sequence:


               
               GTGTGGTACATGGCCTTGAGGGCAGCCTCACCAGTGCTGTGAGGGGCTTTCCTGTGTATT
CCTCCCAGGCTCTAAAATGCCATAGGCAGCCTAGGGTCCAAAGACCAGTGCTAAAGCTCT
CGCTTTGCCATTAAAATGCTATATGACTTCAGGCACATGACTGCCTTCTCGGGGCCTCTT
TTGCCTTTTATACCTAGAAGCCTCCGCAGCTGCTGTCTGAAGGCCTTTGGGGTTTGGACA
CATTGTCATTCTAGCTTCTGATGGGATCCCTAGGGGGTCGAAGTTGATGTGGTCTGCCAC
GCCCCTCCTCCCTGTCCCATCCTCAGAAGCCAGCTGCCTCAGTGCCCAGACGGCAGCTCT
TGGTGGGTTGAGGCCAGGCCAGCTAGCCAGGTGCCATTTCTAATCTGATTTCCAGAAATT
GTGTAGCAGGGCTTGGAGCATAAAACCAATTGGCTGAAGCCTCCTGGGAGGGTTGAAACT
GTCCAGCTTTATAAGAAAAGCCTGGAAAAGATTTGAGGGCTCCATCAATCTACCATGGCT
GCTGTGCCTACGTCTGCACAATGCCCCCCTCCCAGTAGGATGGAGGTTTCTCTGCTTATT
GAGGCCTGAGAGACAACTGCAGGAGCACGCAGCCCAAGTGCCTTGAGAGTGCCGCTGCAG
GGCCCTTGCAATGTCTCCGTCTCCATCTCTCTCATCTCTGGGGTATGCTTGCGCGTGCAT
GTGTCTGCAGGTGCTCTTATCCGTGGGCACATCAACGTGCCCCATCANGAACTCATCCCT
GCCTGTGTGTGAGTATGTGTCCTCCTTGCATCAGTCTTGGGCCACCTGGAGGTTGGGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGGTACATGGCCTTGAGGGCAGCCTCACCAGTGCTGTGAGGGGCTTTCCTGTGTATT
CCTCCCAGGCTCTAAAATGCCATAGGCAGCCTAGGGTCCAAAGACCAGTGCTAAAGCTCT
CGCTTTGCCATTAAAATGCTATATGACTTCAGGCACATGACTGCCTTCTCGGGGCCTCTT
TTGCCTTTTATACCTAGAAGCCTCCGCAGCTGCTGTCTGAAGGCCTTTGGGGTTTGGACA
CATTGTCATTCTAGCTTCTGATGGGATCCCTAGGGGGTCGAAGTTGATGTGGTCTGCCAC
GCCCCTCCTCCCTGTCCCATCCTCAGAAGCCAGCTGCCTCAGTGCCCAGACGGCAGCTCT
TGGTGGGTTGAGGCCAGGCCAGCTAGCCAGGTGCCATTTCTAATCTGATTTCCAGAAATT
GTGTAGCAGGGCTTGGAGCATAAAACCAATTGGCTGAAGCCTCCTGGGAGGGTTGAAACT
GTCCAGCTTTATAAGAAAAGCCTGGAAAAGATTTGAGGGCTCCATCAATCTACCATGGCT
GCTGTGCCTACGTCTGCACAATGCCCCCCTCCCAGTAGGATGGAGGTTTCTCTGCTTATT
GAGGCCTGAGAGACAACTGCAGGAGCACGCAGCCCAAGTGCCTTGAGAGTGCCGCTGCAG
GGCCCTTGCAATGTCTCCGTCTCCATCTCTCTCATCTCTGGGGTATGCTTGCGCGTGCAT
GTGTCTGCAGGTGCTCTTATCCGTGGGCACATCAACGTGCCCCATCANGAACTCATCCCT
GCCTGTGTGTGAGTATGTGTCCTCCTTGCATCAGTCTTGGGCCACCTGGAGGTTGGGGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               88-205, - strand, RNAz p=0.69983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-205, - strand, RNAz p=0.69983

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               85-324, gnl|bosTau2|chr28 (21747463-21747227)
               

               
               85-324, gnl|Hg17|chr10 (72731361-72731640)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-324, gnl|bosTau2|chr28 (21747463-21747227)
               

               
               85-324, gnl|Hg17|chr10 (72731361-72731640)

	85-324, gnl\|bosTau2\|chr28 (21747463-21747227)
	85-324, gnl\|Hg17\|chr10 (72731361-72731640)