Non-Coding RNA Search

Ss1.1-Liv1-LVR010098C04.5

Sequence:


               
               GGACACCTGGGTCCAATTTCCCCAGGGAGTGTGGGGATGGGGGCTGGAAGGTAATGCCAG
CCTCAACCCTCTGGACCAATCGCCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGAT
GCTCCGAGAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGGG
CCCCCATTGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGA
GGCTCTGCTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTG
TTTGGCCTCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCAC
AGCCTGGGACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGT
CGGGCTACACCCCCAGCTGGAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGT
GTGGATGTCTGGGCAGGGCTGCCTCTGGATCCCTCAGGGTGGGGTGACCTGGAAGAGCCA
GAGGCCCCAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTT
CTGCTGCTGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAG
CTGCTGGTCAATTTTGGCCTGAGCCCTGCTGCTCCTCTGACCCCTCGTCAGTTTGCTCTG
CTGTGTCCAGCCCTGCTGTATCAGATTGACAGCCGTGTCTGCATCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACACCTGGGTCCAATTTCCCCAGGGAGTGTGGGGATGGGGGCTGGAAGGTAATGCCAG
CCTCAACCCTCTGGACCAATCGCCGGTGTCCACAGCAAAGCCTGATGGGGACCTGAGGAT
GCTCCGAGAGCAGTAGAAGCCTGAACCAGAGCCTCTAACCCTGTCCCCCCAATAATGGGG
CCCCCATTGAGTCATCTGCTGGCTGGCCTGTGTGTGTGGGTGGCCTTGGGCTGGGTAGGA
GGCTCTGCTCCCAACCTGGGCCCTGCTGAGCAGGAGCAGAACCATTACCTGGCCCAGCTG
TTTGGCCTCTATGGGGAGAACGGGACGCTGACTGCAGGGGGCCTGGCACGGCTTCTTCAC
AGCCTGGGACTAGGCCGAGTTCAAGCCCTTCGCCTGGGACACCACGGGCCTCCCGCTGGT
CGGGCTACACCCCCAGCTGGAGACAATTCCACCCACAGGCCACAGGACCCTGAGCTGAGT
GTGGATGTCTGGGCAGGGCTGCCTCTGGATCCCTCAGGGTGGGGTGACCTGGAAGAGCCA
GAGGCCCCAGCACCACCCCATGGGCCGGCCCCCTCAGGCCTGGGCCTCTTTCACAGGCTT
CTGCTGCTGGACCATTCACTAGCTGACCATCTGAATGAGGATTGTCTGAATGGCTCCCAG
CTGCTGGTCAATTTTGGCCTGAGCCCTGCTGCTCCTCTGACCCCTCGTCAGTTTGCTCTG
CTGTGTCCAGCCCTGCTGTATCAGATTGACAGCCGTGTCTGCATCCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               148-344, + strand, RNAz p=0.910231

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               148-344, + strand, RNAz p=0.910231

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               210-365, - strand, RNAmicro p=0.976887

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               210-365, - strand, RNAmicro p=0.976887

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC027884, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC027884, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               112-459, gnl|bosTau2|chr5 (33392081-33391731)
               

               
               112-459, gnl|Hg17|chr12 (54911263-54911613)
               

               
               112-459, gnl|Mm7|chr10 (127901645-127901300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-459, gnl|bosTau2|chr5 (33392081-33391731)
               

               
               112-459, gnl|Hg17|chr12 (54911263-54911613)
               

               
               112-459, gnl|Mm7|chr10 (127901645-127901300)

	112-459, gnl\|bosTau2\|chr5 (33392081-33391731)
	112-459, gnl\|Hg17\|chr12 (54911263-54911613)
	112-459, gnl\|Mm7\|chr10 (127901645-127901300)