Non-Coding RNA Search

Ss1.1-Liv1-LVR010098D09.5

Sequence:


               
               AACTTTGTTTGGTGTACCTGACTTGGGATTCCCAGTTTTGGAAATGGAGTACTGGATGGG
AGTTTGATGATCTCCAGAGGAGCAGCTGAGAGAAGAGAAGAAAGGTGCATGGCCACTTCC
TAATCCCGGAGCCCAGAGGAAGCATCCCTAGAACTGCAGGGGTGTGAGCCAGGCAAGCCG
AGGGCAGCCTTGAGCCCCACCCTTGCCTGCCTCCCCCGTGGGGGCCAGGATGCTGAAGAA
GCAGTCTGCAGGGCTTGTGCTGTGGGGCGCCATCCTCTTTGTGGCCTGGAACGCCCTGCT
GCTCCTCTTCTTTTGGACACGCCCAGCGCCCGGCAGGCTGCCCTCAGACAGTGCCCTTGA
TGATGACCCCGCCAGCCTCACCCGTGAGGTGATCCGCTTGGCCCAGGATGCTGAGGTGGA
GTTGGAGCGGCAGCGGGGGCTGTTGCAGCAGATCAGGGAGCACCATGCTAGGTGGAGCCA
GCGGTGGAGGGTACCCACTGTGGCCCCCCCTGTGCCACCACGTGTGCCTGTGACCTCTGC
GCCAACTGTGATCCCCATCCTGGTCATCGCCTGTGACCGCAGCACTGTCAGGCGGTGCCT
GGACAAGCTGCTGCATTACCGGCCTTCAGCTGAGCACTTCCCCATCATCGTCAGCCAGGA
CTGTGGGCATGAGGAGACAGCCCAGGTCATTGCCTCCTATGGCAGCGCTGTCACACACAT
CCGGCAGCCAGACCTGAGCAACATCGTAGTGCCACCCCGACACCGAAAGTTCCAGGGCTA
CTATAAGATTGCTCGTCCCTACCGCTGGGCGCTGGGCCAGGTCTTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTTTGTTTGGTGTACCTGACTTGGGATTCCCAGTTTTGGAAATGGAGTACTGGATGGG
AGTTTGATGATCTCCAGAGGAGCAGCTGAGAGAAGAGAAGAAAGGTGCATGGCCACTTCC
TAATCCCGGAGCCCAGAGGAAGCATCCCTAGAACTGCAGGGGTGTGAGCCAGGCAAGCCG
AGGGCAGCCTTGAGCCCCACCCTTGCCTGCCTCCCCCGTGGGGGCCAGGATGCTGAAGAA
GCAGTCTGCAGGGCTTGTGCTGTGGGGCGCCATCCTCTTTGTGGCCTGGAACGCCCTGCT
GCTCCTCTTCTTTTGGACACGCCCAGCGCCCGGCAGGCTGCCCTCAGACAGTGCCCTTGA
TGATGACCCCGCCAGCCTCACCCGTGAGGTGATCCGCTTGGCCCAGGATGCTGAGGTGGA
GTTGGAGCGGCAGCGGGGGCTGTTGCAGCAGATCAGGGAGCACCATGCTAGGTGGAGCCA
GCGGTGGAGGGTACCCACTGTGGCCCCCCCTGTGCCACCACGTGTGCCTGTGACCTCTGC
GCCAACTGTGATCCCCATCCTGGTCATCGCCTGTGACCGCAGCACTGTCAGGCGGTGCCT
GGACAAGCTGCTGCATTACCGGCCTTCAGCTGAGCACTTCCCCATCATCGTCAGCCAGGA
CTGTGGGCATGAGGAGACAGCCCAGGTCATTGCCTCCTATGGCAGCGCTGTCACACACAT
CCGGCAGCCAGACCTGAGCAACATCGTAGTGCCACCCCGACACCGAAAGTTCCAGGGCTA
CTATAAGATTGCTCGTCCCTACCGCTGGGCGCTGGGCCAGGTCTTTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q5SW41_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q5SW41_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               142-340, + strand, RNAz p=0.83199

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-340, + strand, RNAz p=0.83199

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               103-826, gnl|bosTau2|chr7 (22400161-22399439)
               

               
               103-826, gnl|Hg17|chr5 (180152705-180151987)
               

               
               103-826, gnl|Mm7|chr11 (49217326-49218045)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               103-826, gnl|bosTau2|chr7 (22400161-22399439)
               

               
               103-826, gnl|Hg17|chr5 (180152705-180151987)
               

               
               103-826, gnl|Mm7|chr11 (49217326-49218045)

	103-826, gnl\|bosTau2\|chr7 (22400161-22399439)
	103-826, gnl\|Hg17\|chr5 (180152705-180151987)
	103-826, gnl\|Mm7\|chr11 (49217326-49218045)