Ss1.1-Liv1-LVR010098E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAGAGCTATGCCCCAGAGTTGGGGAGACCCAAGGGGGAGTATAGGGATTACAGCAATGA CTGGAGCCCCAGTGACACAGTGCGACGCCTCCGGAAGGGCAAGGTCTGCTCACTGGAAAG ATTCCGCTCCTTACAGGACAAGCTACAACTTCTGGAAGAAGTAGTCAGCATGCATGATGG AAACGTCATTACTGCAGTTCTGATCTTCCTGAAGAGGACACTGAGCAAAGAGATCCTCTT CCGAGAGCTGGAGGTGCGACAGGTTGCCCTGAGACATCTCATTCACTTCCTTAAGGAGAT AGGGGATCAAAAGCTGCTCTTAGACCTCTTTAGGTTCCTAGATAGGACAGAAGAGCTTGC GCTATCCCATTATCGAGAACACTTGAACATTCAGGACCCTGAGAAACGAAAAGAATTTCT TAAGACCTGCATTGGTTTGCCGTTTTCAGCAGAAGACTCTGCACACATACAAGACCATTA CACGCTGCTGGAACGTCAGATCATCATCGAGGCAAATGATCGTCATCTGGAGTCAGCAGG ACAGACGGAGATCTTCCGGAAGCACCCCCGCAAAGCGTCCATCCTCAACATGCCGTTAGT GACGACGCTCTTCTACTCCTGCTTCTACCACTACACGGAGGCTGAGGGGACATTCAGCAG TCCGGTCAACCTGAAGAAGACCTTTAAGATTCCAGACAAACAATATGTGCTGACAGCCCT GGCTGCTCGCGCCAAGCTTCGGGCCTGGCATGATGTCGACGCCCTCTTCACCACAAAGAA CTGGCTGGGCTACACCAAGAAGAGAGCACCCATTGGCTTCCATCGGGTTGTGGAAATTTT GCACAAGAACAGCGCTCCTGTCCAGATATTACAGGAGTATGTCAATCTGGTGGAAGATGT GGACACAAAGTTGAACTTAGCCACCAAGTTCAAGTGTCATGATGTCGTCATTGATACTTG CCGGGACCTGAAGGATCGCCAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAGAGCTATGCCCCAGAGTTGGGGAGACCCAAGGGGGAGTATAGGGATTACAGCAATGA CTGGAGCCCCAGTGACACAGTGCGACGCCTCCGGAAGGGCAAGGTCTGCTCACTGGAAAG ATTCCGCTCCTTACAGGACAAGCTACAACTTCTGGAAGAAGTAGTCAGCATGCATGATGG AAACGTCATTACTGCAGTTCTGATCTTCCTGAAGAGGACACTGAGCAAAGAGATCCTCTT CCGAGAGCTGGAGGTGCGACAGGTTGCCCTGAGACATCTCATTCACTTCCTTAAGGAGAT AGGGGATCAAAAGCTGCTCTTAGACCTCTTTAGGTTCCTAGATAGGACAGAAGAGCTTGC GCTATCCCATTATCGAGAACACTTGAACATTCAGGACCCTGAGAAACGAAAAGAATTTCT TAAGACCTGCATTGGTTTGCCGTTTTCAGCAGAAGACTCTGCACACATACAAGACCATTA CACGCTGCTGGAACGTCAGATCATCATCGAGGCAAATGATCGTCATCTGGAGTCAGCAGG ACAGACGGAGATCTTCCGGAAGCACCCCCGCAAAGCGTCCATCCTCAACATGCCGTTAGT GACGACGCTCTTCTACTCCTGCTTCTACCACTACACGGAGGCTGAGGGGACATTCAGCAG TCCGGTCAACCTGAAGAAGACCTTTAAGATTCCAGACAAACAATATGTGCTGACAGCCCT GGCTGCTCGCGCCAAGCTTCGGGCCTGGCATGATGTCGACGCCCTCTTCACCACAAAGAA CTGGCTGGGCTACACCAAGAAGAGAGCACCCATTGGCTTCCATCGGGTTGTGGAAATTTT GCACAAGAACAGCGCTCCTGTCCAGATATTACAGGAGTATGTCAATCTGGTGGAAGATGT GGACACAAAGTTGAACTTAGCCACCAAGTTCAAGTGTCATGATGTCGTCATTGATACTTG CCGGGACCTGAAGGATCGCCAGCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 229-335, - strand, RNAz p=0.939245 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 229-335, - strand, RNAz p=0.939245 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 229-335, gnl|bosTau2|chr10 (61170294-61170188) | |
| 229-335, gnl|canFam2|chr8 (53283505-53283616) | |
| 229-335, gnl|danRer3|chr20 (18678680-18678791) | |
| 229-335, gnl|dasNov1|scaffold_34633 (9421-9532) | |
| 229-335, gnl|galGal2|chr5 (36062244-36062355) | |
| 229-335, gnl|hg17|chr14 (76978651-76978762) | |
| 229-335, gnl|Hg17|chr14 (76978760-76978654) | |
| 229-335, gnl|loxAfr1|scaffold_729 (55006-55117) | |
| 229-335, gnl|mm7|chr12 (85254357-85254468) | |
| 229-335, gnl|Mm7|chr12 (85254466-85254360) | |
| 229-335, gnl|monDom2|scaffold_8 (56014911-56014800) | |
| 229-335, gnl|oryCun1|scaffold_119136 (80011-79900) | |
| 229-335, gnl|panTro1|chr15 (77042944-77043055) | |
| 229-335, gnl|rheMac2|chr7 (140594430-140594541) | |
| 229-335, gnl|tetNig1|chrUn_random (50566663-50566774) | |
| 229-335, gnl|xenTro1|scaffold_170 (351637-351526) | |
| 510-647, gnl|bosTau2|chr10 (61164297-61164160) | |
| 510-647, gnl|canFam2|chr8 (53276407-53276527) | |
| 510-647, gnl|danRer3|chr20 (18669164-18669280) | |
| 510-647, gnl|echTel1|scaffold_308517 (141222-141342) | |
| 510-647, gnl|galGal2|chr5 (36060824-36060944) | |
| 510-647, gnl|hg17|chr14 (76971342-76971462) | |
| 510-647, gnl|Hg17|chr14 (76971491-76971354) | |
| 510-647, gnl|loxAfr1|scaffold_729 (48985-49105) | |
| 510-647, gnl|mm7|chr12 (85248762-85248882) | |
| 510-647, gnl|Mm7|chr12 (85248911-85248774) | |
| 510-647, gnl|monDom2|scaffold_8 (56020082-56019958) | |
| 510-647, gnl|oryCun1|scaffold_119136 (87719-87599) | |
| 510-647, gnl|panTro1|chr15 (77035642-77035762) | |
| 510-647, gnl|rheMac2|chr7 (140587033-140587153) | |
| 510-647, gnl|tetNig1|chrUn_random (50566074-50566182) | |
| 510-647, gnl|xenTro1|scaffold_170 (355749-355629) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 229-335, gnl|bosTau2|chr10 (61170294-61170188) | |
| 229-335, gnl|canFam2|chr8 (53283505-53283616) | |
| 229-335, gnl|danRer3|chr20 (18678680-18678791) | |
| 229-335, gnl|dasNov1|scaffold_34633 (9421-9532) | |
| 229-335, gnl|galGal2|chr5 (36062244-36062355) | |
| 229-335, gnl|hg17|chr14 (76978651-76978762) | |
| 229-335, gnl|Hg17|chr14 (76978760-76978654) | |
| 229-335, gnl|loxAfr1|scaffold_729 (55006-55117) | |
| 229-335, gnl|mm7|chr12 (85254357-85254468) | |
| 229-335, gnl|Mm7|chr12 (85254466-85254360) | |
| 229-335, gnl|monDom2|scaffold_8 (56014911-56014800) | |
| 229-335, gnl|oryCun1|scaffold_119136 (80011-79900) | |
| 229-335, gnl|panTro1|chr15 (77042944-77043055) | |
| 229-335, gnl|rheMac2|chr7 (140594430-140594541) | |
| 229-335, gnl|tetNig1|chrUn_random (50566663-50566774) | |
| 229-335, gnl|xenTro1|scaffold_170 (351637-351526) | |
| 510-647, gnl|bosTau2|chr10 (61164297-61164160) | |
| 510-647, gnl|canFam2|chr8 (53276407-53276527) | |
| 510-647, gnl|danRer3|chr20 (18669164-18669280) | |
| 510-647, gnl|echTel1|scaffold_308517 (141222-141342) | |
| 510-647, gnl|galGal2|chr5 (36060824-36060944) | |
| 510-647, gnl|hg17|chr14 (76971342-76971462) | |
| 510-647, gnl|Hg17|chr14 (76971491-76971354) | |
| 510-647, gnl|loxAfr1|scaffold_729 (48985-49105) | |
| 510-647, gnl|mm7|chr12 (85248762-85248882) | |
| 510-647, gnl|Mm7|chr12 (85248911-85248774) | |
| 510-647, gnl|monDom2|scaffold_8 (56020082-56019958) | |
| 510-647, gnl|oryCun1|scaffold_119136 (87719-87599) | |
| 510-647, gnl|panTro1|chr15 (77035642-77035762) | |
| 510-647, gnl|rheMac2|chr7 (140587033-140587153) | |
| 510-647, gnl|tetNig1|chrUn_random (50566074-50566182) | |
| 510-647, gnl|xenTro1|scaffold_170 (355749-355629) |