Non-Coding RNA Search

Ss1.1-Liv1-LVR010099F04.5

Sequence:


               
               ATCATAAAAGTTTTTCCAGGGATACAAGACAGAAGACTCTGAGTTTGTTTATCAAAGCAC
ACAGAATTTCAGCTATGATTGTACCATGTGTCCCAAAATATACAGCCATTCTGGCCCTCT
TGGTCCTGGGTGTTGGTGCACTGGACACTTTCATTGCTGCAGTGTATGAGCATGCTGTCA
CATTACCAAACAGAACAGGAACACCTGTGCTGGAAAAAGAAGCTTTGCTCCTGATGCACA
AGAACATAGATGTTTTGGAGACAGCAGTTAAACTGGCAGCCAGACAGGGCGCACATATCA
TTGTGACCCCAGAAGATGGAATTTATGGCTGGGTCTTCACCAGGGAGACCATTTATCCCT
ACCTGGAGGATATCCCAGACCCTGGAGTGAACTGGATTCCATGTAAAGATCCCCAGAGTA
CAATCTTTTTGCACCTGAAATTCAATTTGATTTCCCCAAGGATTCAGAATTTGTGACTTT
TGACACTCCTTTTGGGAAGTTTGGCATTTTCACTTGCTTTGACATTTTTTCTCATGACCC
GGCTGTGGTGCTCGTGGAAGAATTTCACGTTGACAGCCTTCTCTACCCTGCAGCCTGGTA
CAACACGTTGCCCCTCCTCTCAGCTGTCCCCTTCCACTCGGCGTGGGCCCGAGCCATGAG
AGTCAATCTGCTTGCTGCAAATACCCACCACACTGGCATGCACATGACAGGGAGTGGAAT
CTATGCACCAGAGGCCGTCAAGGTGTATCACTATGACATGGAAACAGAGAGTGGCCAGCT
GATGCTCTCAGAATTGAAGTCCCGACCTCGAAGAGAACCCACCTACCCTGCAGCTATTGA
CTGGAGTGCTTATGCCAGAGGTGTCAAGCCATTCGAGTCTGAACATCTGAATTTTCCAGG
GATGATTTATTTTGATGAGTTTACTTTCACGGAGCTTAAGAGAAACACAGGAAATTATAC
GGTTTGTCAGAAAGACCTGTGCTGTCATTTAACTTACAAGATGTCTGAGAAACGAACAGA
TGAGGTGTATGCAGTANGGGCCTTTGACGGACTGCATACAGTAGAAGGCCAATATTACTT
ACAGGTAGAAACTCTCCAATATGTTAAAATGCTTTTTTTGTTTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATAAAAGTTTTTCCAGGGATACAAGACAGAAGACTCTGAGTTTGTTTATCAAAGCAC
ACAGAATTTCAGCTATGATTGTACCATGTGTCCCAAAATATACAGCCATTCTGGCCCTCT
TGGTCCTGGGTGTTGGTGCACTGGACACTTTCATTGCTGCAGTGTATGAGCATGCTGTCA
CATTACCAAACAGAACAGGAACACCTGTGCTGGAAAAAGAAGCTTTGCTCCTGATGCACA
AGAACATAGATGTTTTGGAGACAGCAGTTAAACTGGCAGCCAGACAGGGCGCACATATCA
TTGTGACCCCAGAAGATGGAATTTATGGCTGGGTCTTCACCAGGGAGACCATTTATCCCT
ACCTGGAGGATATCCCAGACCCTGGAGTGAACTGGATTCCATGTAAAGATCCCCAGAGTA
CAATCTTTTTGCACCTGAAATTCAATTTGATTTCCCCAAGGATTCAGAATTTGTGACTTT
TGACACTCCTTTTGGGAAGTTTGGCATTTTCACTTGCTTTGACATTTTTTCTCATGACCC
GGCTGTGGTGCTCGTGGAAGAATTTCACGTTGACAGCCTTCTCTACCCTGCAGCCTGGTA
CAACACGTTGCCCCTCCTCTCAGCTGTCCCCTTCCACTCGGCGTGGGCCCGAGCCATGAG
AGTCAATCTGCTTGCTGCAAATACCCACCACACTGGCATGCACATGACAGGGAGTGGAAT
CTATGCACCAGAGGCCGTCAAGGTGTATCACTATGACATGGAAACAGAGAGTGGCCAGCT
GATGCTCTCAGAATTGAAGTCCCGACCTCGAAGAGAACCCACCTACCCTGCAGCTATTGA
CTGGAGTGCTTATGCCAGAGGTGTCAAGCCATTCGAGTCTGAACATCTGAATTTTCCAGG
GATGATTTATTTTGATGAGTTTACTTTCACGGAGCTTAAGAGAAACACAGGAAATTATAC
GGTTTGTCAGAAAGACCTGTGCTGTCATTTAACTTACAAGATGTCTGAGAAACGAACAGA
TGAGGTGTATGCAGTANGGGCCTTTGACGGACTGCATACAGTAGAAGGCCAATATTACTT
ACAGGTAGAAACTCTCCAATATGTTAAAATGCTTTTTTTGTTTGTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BQY1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BQY1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               169-286, - strand, RNAz p=0.526018

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-286, - strand, RNAz p=0.526018

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-286, gnl|bosTau2|chr9 (40981298-40981019)
               

               
               3-286, gnl|Hg17|chr6 (133097595-133097313)
               

               
               3-286, gnl|Mm7|chr10 (23602801-23603086)
               


               
               709-1127, gnl|bosTau2|chr9 (40971346-40970903)
               

               
               709-1127, gnl|Hg17|chr6 (133087813-133087395)
               

               
               709-1127, gnl|Mm7|chr10 (23616941-23617344)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-286, gnl|bosTau2|chr9 (40981298-40981019)
               

               
               3-286, gnl|Hg17|chr6 (133097595-133097313)
               

               
               3-286, gnl|Mm7|chr10 (23602801-23603086)
               


               
               709-1127, gnl|bosTau2|chr9 (40971346-40970903)
               

               
               709-1127, gnl|Hg17|chr6 (133087813-133087395)
               

               
               709-1127, gnl|Mm7|chr10 (23616941-23617344)

	3-286, gnl\|bosTau2\|chr9 (40981298-40981019)
	3-286, gnl\|Hg17\|chr6 (133097595-133097313)
	3-286, gnl\|Mm7\|chr10 (23602801-23603086)

	709-1127, gnl\|bosTau2\|chr9 (40971346-40970903)
	709-1127, gnl\|Hg17\|chr6 (133087813-133087395)
	709-1127, gnl\|Mm7\|chr10 (23616941-23617344)