Non-Coding RNA Search

Ss1.1-Liv1-LVR010100E04.5

Sequence:


               
               CTTAAGTTCCTCCGCCGGCGGAGGGCCAGGGTGAAGGGATGGCCTGGCGGACGGCGCGGC
TGCTGCTGCTAGCCGGAGCAGCCGCACTAGCAAGCGGTTCACAGGGCGACCGAGAGCCGG
TGTACCGTGACTGCTTGCTCCAGTGCGAGGAGCGGAACTGCTCCGGGGGCGCACTGAAGC
ACTTCCGCTCCCACCAGCCAATCTACATGAGTCTAGCAGGCTGGACTTGTCGGGACGACT
GTAAGTATGAGTGTATGTGGGTCACCGTTGGCCTCTACCTCCAGGAAGGTCACAAAGTGC
CTCAGTTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTGCTTCCAAGAGCCAGCTTCTG
CTGTGGCCTCTTTCCTCAATGGTCTGGCCAGCCTGGTGATGCTCTGTCGCTACCGCGCCT
CCGTGCCAGCCTCTTCCCCCATGTACCCCACCTGCGTGGCCTTTGCTTGGGTCTCCCTCA
ATGCTTGGTTCTGGTCCACGGTCTTCCACACCAGGGACACCGACCTCACAGAGGTGAGCG
CCTCCCACTCCCTCCTCTGCCTGGGACAGCCCCGGAGGAGCCCAGGCGAGGTGGGGCAGA
GGCGGCTCTTCCTTCTCCGGACTCACTCGGTCTCCGGGTCTCCCGAGCACCTGCCCTATG
CTGGGCATTTCAGATCCGTGAGTGCACTTGAGCCTCGCTTCACCCGTGAGGCAGGTGTGA
TTATTGGCCCTCCGGCCTCAATGCAGCAGCTGAGCCTTGGATGGTTGAAAGCACCTGCCC
GGGATCGGGCAGCCAGTGAAGGGGTGCAGTTGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAGTTCCTCCGCCGGCGGAGGGCCAGGGTGAAGGGATGGCCTGGCGGACGGCGCGGC
TGCTGCTGCTAGCCGGAGCAGCCGCACTAGCAAGCGGTTCACAGGGCGACCGAGAGCCGG
TGTACCGTGACTGCTTGCTCCAGTGCGAGGAGCGGAACTGCTCCGGGGGCGCACTGAAGC
ACTTCCGCTCCCACCAGCCAATCTACATGAGTCTAGCAGGCTGGACTTGTCGGGACGACT
GTAAGTATGAGTGTATGTGGGTCACCGTTGGCCTCTACCTCCAGGAAGGTCACAAAGTGC
CTCAGTTCCATGGCAAGTGGCCCTTCTCCCGGTTCCTGTGCTTCCAAGAGCCAGCTTCTG
CTGTGGCCTCTTTCCTCAATGGTCTGGCCAGCCTGGTGATGCTCTGTCGCTACCGCGCCT
CCGTGCCAGCCTCTTCCCCCATGTACCCCACCTGCGTGGCCTTTGCTTGGGTCTCCCTCA
ATGCTTGGTTCTGGTCCACGGTCTTCCACACCAGGGACACCGACCTCACAGAGGTGAGCG
CCTCCCACTCCCTCCTCTGCCTGGGACAGCCCCGGAGGAGCCCAGGCGAGGTGGGGCAGA
GGCGGCTCTTCCTTCTCCGGACTCACTCGGTCTCCGGGTCTCCCGAGCACCTGCCCTATG
CTGGGCATTTCAGATCCGTGAGTGCACTTGAGCCTCGCTTCACCCGTGAGGCAGGTGTGA
TTATTGGCCCTCCGGCCTCAATGCAGCAGCTGAGCCTTGGATGGTTGAAAGCACCTGCCC
GGGATCGGGCAGCCAGTGAAGGGGTGCAGTTGAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55645329|ref|XP_511460.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55645329|ref|XP_511460.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               691-805, + strand, RNAz p=0.594043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               691-805, + strand, RNAz p=0.594043

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY358437, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY358437, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-220, gnl|bosTau2|chr19 (32330905-32330688)
               

               
               3-220, gnl|Hg17|chr17 (35097829-35097612)
               

               
               3-220, gnl|Mm7|chr11 (98509470-98509253)
               


               
               461-808, gnl|bosTau2|chr19 (32320466-32320125)
               

               
               461-808, gnl|Hg17|chr17 (35084468-35084128)
               

               
               461-808, gnl|Mm7|chr11 (98500806-98500463)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-220, gnl|bosTau2|chr19 (32330905-32330688)
               

               
               3-220, gnl|Hg17|chr17 (35097829-35097612)
               

               
               3-220, gnl|Mm7|chr11 (98509470-98509253)
               


               
               461-808, gnl|bosTau2|chr19 (32320466-32320125)
               

               
               461-808, gnl|Hg17|chr17 (35084468-35084128)
               

               
               461-808, gnl|Mm7|chr11 (98500806-98500463)

	3-220, gnl\|bosTau2\|chr19 (32330905-32330688)
	3-220, gnl\|Hg17\|chr17 (35097829-35097612)
	3-220, gnl\|Mm7\|chr11 (98509470-98509253)

	461-808, gnl\|bosTau2\|chr19 (32320466-32320125)
	461-808, gnl\|Hg17\|chr17 (35084468-35084128)
	461-808, gnl\|Mm7\|chr11 (98500806-98500463)