Non-Coding RNA Search

Ss1.1-Liv1-LVR010103F05.5

Sequence:


               
               GGACCGAAGGGTGGGAGTTTCGCCCCCATGGGCCGCAGGTCCTGAGGATTATACCACACC
GTCTTGATTGCCATTTTATTCGTGAGATCCGATCAGCCCAGGTGATCTGTAAGAATTGGA
CTAAATGTGGAAATCCACTTCTGGAAAATGTCTGACAGCCACTCTTTACCACTGTTGCCT
GCAACAGAGCTGGTCACGCATCGCAAGGGATTAGGACCAAAATTGAGGCATCCAGCACCC
CGTGTTTCCCACCTGGGTGGAAAAGCGGAGGGAAGCGCCAGGGCGGAACTGGCTGCTGTG
TCTCAAGGACTCTAGGAGAAGCCTCGGTCCCCGGGGCGGCAAAGGGGACCCGAGTGAGGC
TTGAGGACTTAGAAATGACAATGGCGCCAGGGAGCGTCCCAGATACCGGCTTCCAAGCGG
CTAAAGCGGCTGAGGCGCGAAGAAGAAGCAGCTGCCTCGCTTCAGAGAGACGGGCACTTG
CTGTCCCCTGCCGAGCCTGGAACAGGCTGCTCGCCGGGACCACGGCCTCCTACTGCCTCC
TCTCACCACTTCAAGAGACACCATCTCCTAAAGGACAGGAACTCAGGAGCTAGTGGGGAA
GCCTTGAGCCCTCTGGCCTGGCTCAAAGGCCAACGGCCCTCCAGGCTGCTGTGCCCCGAC
CACGCTGGGTCACACAGACGGGCCCACCTGCCTCGCCTGCTGTCCTGTCCTGCTCTCCTG
CCATCGCCGGCTGTGGATTCCTTCCTGGGAACAGCCAGTGCTTGAAACAAAGTCGGAAGC
ACAGCGGCCCCACCAGTGTCTCGTCTCACCCCGGGTCTGAGTTTTGGGGAGGGCGGGTCC
AGGTCCGCATGGCCCCTGGCCAGCACCTGCCCCCAGGCCTCCCTCCCAGCCCACTGCCCG
CAGCACCCACTGCTCCCATCCCAGGCGGTGGCTCCCTTGGGCCCACGGCGGGTCCAGTGG
GTGCACCCCCTGCTCCCCACTGTGGAGAGCTTCACAGTCCTTGTCCGGGAGTCCTGCCCT
GGCCCCTCCTGTTAGCCCTGAGGAGCTCATAAGCCCCTTCCCAGCAAGGTCCAGATGATA
AGCTGAGGCTCATAGAGGGCTGAGAGCTGCTGGGGGTCACGCGGACCATCAGGCAGCAGT
GGGTCCTCTACTCAATCTGAGGAACGTGAGCAGAGCCAACCCCACCTCACACACACACAC
CCCAACCCCAAGGTCTGGGGACCCCCATGTGGGCTCAAATCCAGGCCTGTGGCCCATCCT
CCGCCCCCTCATCCCAACCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCGAAGGGTGGGAGTTTCGCCCCCATGGGCCGCAGGTCCTGAGGATTATACCACACC
GTCTTGATTGCCATTTTATTCGTGAGATCCGATCAGCCCAGGTGATCTGTAAGAATTGGA
CTAAATGTGGAAATCCACTTCTGGAAAATGTCTGACAGCCACTCTTTACCACTGTTGCCT
GCAACAGAGCTGGTCACGCATCGCAAGGGATTAGGACCAAAATTGAGGCATCCAGCACCC
CGTGTTTCCCACCTGGGTGGAAAAGCGGAGGGAAGCGCCAGGGCGGAACTGGCTGCTGTG
TCTCAAGGACTCTAGGAGAAGCCTCGGTCCCCGGGGCGGCAAAGGGGACCCGAGTGAGGC
TTGAGGACTTAGAAATGACAATGGCGCCAGGGAGCGTCCCAGATACCGGCTTCCAAGCGG
CTAAAGCGGCTGAGGCGCGAAGAAGAAGCAGCTGCCTCGCTTCAGAGAGACGGGCACTTG
CTGTCCCCTGCCGAGCCTGGAACAGGCTGCTCGCCGGGACCACGGCCTCCTACTGCCTCC
TCTCACCACTTCAAGAGACACCATCTCCTAAAGGACAGGAACTCAGGAGCTAGTGGGGAA
GCCTTGAGCCCTCTGGCCTGGCTCAAAGGCCAACGGCCCTCCAGGCTGCTGTGCCCCGAC
CACGCTGGGTCACACAGACGGGCCCACCTGCCTCGCCTGCTGTCCTGTCCTGCTCTCCTG
CCATCGCCGGCTGTGGATTCCTTCCTGGGAACAGCCAGTGCTTGAAACAAAGTCGGAAGC
ACAGCGGCCCCACCAGTGTCTCGTCTCACCCCGGGTCTGAGTTTTGGGGAGGGCGGGTCC
AGGTCCGCATGGCCCCTGGCCAGCACCTGCCCCCAGGCCTCCCTCCCAGCCCACTGCCCG
CAGCACCCACTGCTCCCATCCCAGGCGGTGGCTCCCTTGGGCCCACGGCGGGTCCAGTGG
GTGCACCCCCTGCTCCCCACTGTGGAGAGCTTCACAGTCCTTGTCCGGGAGTCCTGCCCT
GGCCCCTCCTGTTAGCCCTGAGGAGCTCATAAGCCCCTTCCCAGCAAGGTCCAGATGATA
AGCTGAGGCTCATAGAGGGCTGAGAGCTGCTGGGGGTCACGCGGACCATCAGGCAGCAGT
GGGTCCTCTACTCAATCTGAGGAACGTGAGCAGAGCCAACCCCACCTCACACACACACAC
CCCAACCCCAAGGTCTGGGGACCCCCATGTGGGCTCAAATCCAGGCCTGTGGCCCATCCT
CCGCCCCCTCATCCCAACCCCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               865-1089, - strand, RNAz p=0.992758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               865-1089, - strand, RNAz p=0.992758

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1030-1133, - strand, RNAmicro p=0.999969

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1030-1133, - strand, RNAmicro p=0.999969

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               38-213, gnl|bosTau2|chr29 (38435434-38435611)
               

               
               38-213, gnl|Hg17|chr11 (65022591-65022444)
               


               
               575-1120, gnl|bosTau2|chr29 (38472637-38473200)
               

               
               575-1120, gnl|Hg17|chr11 (64969031-64968465)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-213, gnl|bosTau2|chr29 (38435434-38435611)
               

               
               38-213, gnl|Hg17|chr11 (65022591-65022444)
               


               
               575-1120, gnl|bosTau2|chr29 (38472637-38473200)
               

               
               575-1120, gnl|Hg17|chr11 (64969031-64968465)

	38-213, gnl\|bosTau2\|chr29 (38435434-38435611)
	38-213, gnl\|Hg17\|chr11 (65022591-65022444)

	575-1120, gnl\|bosTau2\|chr29 (38472637-38473200)
	575-1120, gnl\|Hg17\|chr11 (64969031-64968465)