Ss1.1-Liv1-LVR010105A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAAAGGCCCAACACAGAGACACTTTCATTGAAGAACGCTATGGAAAATATAACATCAGT GATCCTCTAATGGCACTCCAGAGAGACTTTGAAACACTGAAGGAGAAGAATGATGGCGAG AAGCAGCCAGTCTGCACAAACCCACTCTCAATTCTCAAGGTGGTGATGAAGCAGTGCAAG AACATGCAGGAGCGCATGCTGTCGCAGCTGGCTGCTGCTGAGAGCAGGCACCGCAAGGTG ATCCTAGACCTTGAGGAAGAACGGCAGAGGCATGCACAAGACACAGCTGAAGGAGATGAT GTCACCTACATGCTGGAGAAGGAGAGAGAGCGGTTGACTCAACAGTTGGAATTTGAAAAG TCCCAAGTGAAAAAGTTTGAAAAAGAGCAGAAGAAGCTCTCCAGTCAGCTGGAAGAGGAG CGCTCCCGCCACAAGCAGCTCTCCTCCATGCTAGTGCGAGAGTGCAAGAAGGCAACCAGC AAGGCCGCCGAGGAAGGCCAGAAGGCAGGAGAGCTGAGCCTGAAACTGGAGAAGGAGAAG AGCCGTGTGAGCAAGCTGGAGGAAGAGCTGGCCGCCGAGAGGAAGCGGGGCTTGCAGACA GAGGCCCAGGTGGAGAAGCAGTTGTCTGAATTTGACATTGAAAGGGAACAACTGAGAGCA AAGCTGAACCGAGAAGAAAACCGGACCAAAACTCTGAAAGAAGAGATGGAGAGTTTGAAG AAGATAGTGAAAGACCTTGAGGCTTCGCATCAGCAAAGTAGCCCCAGCGAGCAACTGAAG AAACCAGTAACCATGTCTAAAGGCACCATGACTGAGCCGCCTGTGCTAGTGTCCGTATTT TGCCAAACGGAGACTTTTCAGGTAGAAAGAATCCATGGGAGCAGCACAGCCAAGGTGACA ACCCCTGGGCTGCCTGGTCCCACCACTCCTACTTCCTCTTATGCAAAAACCAATGGCCAT TTTGACCCAGAGCTACAAACTACCAAGGAGTTGATTACAAGCAGCAGTGTAGAAAACCAA GTGCTTCCACGAGAAAAGCCTGTGGGACTGGCCCAAGAGAAAGCAGTAGAGAATGGAGGA TGTCCTGTGGCAATAGAGACTCCAGTCCCAACACCTAGTCTCCTCCCTTCCAGCGGGAGC CCACCATCTCCCAGCAGCACTGCCTCTTCCTCTCTCACGTCCTCTCCTTGCTCTTCACCA GTACTAACCAAGCGCTTATTAGGGTCATCAGCTAGCAGCCCTGGCTAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAAAGGCCCAACACAGAGACACTTTCATTGAAGAACGCTATGGAAAATATAACATCAGT GATCCTCTAATGGCACTCCAGAGAGACTTTGAAACACTGAAGGAGAAGAATGATGGCGAG AAGCAGCCAGTCTGCACAAACCCACTCTCAATTCTCAAGGTGGTGATGAAGCAGTGCAAG AACATGCAGGAGCGCATGCTGTCGCAGCTGGCTGCTGCTGAGAGCAGGCACCGCAAGGTG ATCCTAGACCTTGAGGAAGAACGGCAGAGGCATGCACAAGACACAGCTGAAGGAGATGAT GTCACCTACATGCTGGAGAAGGAGAGAGAGCGGTTGACTCAACAGTTGGAATTTGAAAAG TCCCAAGTGAAAAAGTTTGAAAAAGAGCAGAAGAAGCTCTCCAGTCAGCTGGAAGAGGAG CGCTCCCGCCACAAGCAGCTCTCCTCCATGCTAGTGCGAGAGTGCAAGAAGGCAACCAGC AAGGCCGCCGAGGAAGGCCAGAAGGCAGGAGAGCTGAGCCTGAAACTGGAGAAGGAGAAG AGCCGTGTGAGCAAGCTGGAGGAAGAGCTGGCCGCCGAGAGGAAGCGGGGCTTGCAGACA GAGGCCCAGGTGGAGAAGCAGTTGTCTGAATTTGACATTGAAAGGGAACAACTGAGAGCA AAGCTGAACCGAGAAGAAAACCGGACCAAAACTCTGAAAGAAGAGATGGAGAGTTTGAAG AAGATAGTGAAAGACCTTGAGGCTTCGCATCAGCAAAGTAGCCCCAGCGAGCAACTGAAG AAACCAGTAACCATGTCTAAAGGCACCATGACTGAGCCGCCTGTGCTAGTGTCCGTATTT TGCCAAACGGAGACTTTTCAGGTAGAAAGAATCCATGGGAGCAGCACAGCCAAGGTGACA ACCCCTGGGCTGCCTGGTCCCACCACTCCTACTTCCTCTTATGCAAAAACCAATGGCCAT TTTGACCCAGAGCTACAAACTACCAAGGAGTTGATTACAAGCAGCAGTGTAGAAAACCAA GTGCTTCCACGAGAAAAGCCTGTGGGACTGGCCCAAGAGAAAGCAGTAGAGAATGGAGGA TGTCCTGTGGCAATAGAGACTCCAGTCCCAACACCTAGTCTCCTCCCTTCCAGCGGGAGC CCACCATCTCCCAGCAGCACTGCCTCTTCCTCTCTCACGTCCTCTCCTTGCTCTTCACCA GTACTAACCAAGCGCTTATTAGGGTCATCAGCTAGCAGCCCTGGCTAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 104-239, - strand, RNAz p=0.971123 | |
| 662-821, - strand, RNAz p=0.850275 | |
| 1062-1181, - strand, RNAz p=0.511526 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 104-239, - strand, RNAz p=0.971123 | |
| 662-821, - strand, RNAz p=0.850275 | |
| 1062-1181, - strand, RNAz p=0.511526 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 25-239, gnl|bosTau2|chr4 (24801991-24802199) | |
| 25-239, gnl|canFam2|chr14 (59564096-59564357) | |
| 25-239, gnl|danRer3|chr18 (24979092-24979343) | |
| 25-239, gnl|dasNov1|scaffold_127420 (2238-1977) | |
| 25-239, gnl|echTel1|scaffold_197862 (13351-13611) | |
| 25-239, gnl|fr1|chrUn (157319150-157319415) | |
| 25-239, gnl|galGal2|chr1 (21475930-21475665) | |
| 25-239, gnl|hg17|chr7 (117044757-117045018) | |
| 25-239, gnl|Hg17|chr7 (117044976-117044768) | |
| 25-239, gnl|loxAfr1|scaffold_1434 (156504-156765) | |
| 25-239, gnl|mm7|chr6 (18388696-18388953) | |
| 25-239, gnl|Mm7|chr6 (18388911-18388706) | |
| 25-239, gnl|monDom2|scaffold_22 (30950826-30950567) | |
| 25-239, gnl|oryCun1|scaffold_198552 (44520-44259) | |
| 25-239, gnl|panTro1|chr6 (119328408-119328669) | |
| 25-239, gnl|rheMac2|chr3 (155135156-155135417) | |
| 25-239, gnl|rn3|chr4 (44424177-44424435) | |
| 25-239, gnl|tetNig1|chr13 (10765146-10765402) | |
| 25-239, gnl|xenTro1|scaffold_17 (2483718-2483966) | |
| 343-1248, gnl|bosTau2|chr3 (27653668-27652763) | |
| 343-1248, gnl|Hg17|chr1 (112710592-112711497) | |
| 343-1248, gnl|Mm7|chr3 (104803317-104802412) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 25-239, gnl|bosTau2|chr4 (24801991-24802199) | |
| 25-239, gnl|canFam2|chr14 (59564096-59564357) | |
| 25-239, gnl|danRer3|chr18 (24979092-24979343) | |
| 25-239, gnl|dasNov1|scaffold_127420 (2238-1977) | |
| 25-239, gnl|echTel1|scaffold_197862 (13351-13611) | |
| 25-239, gnl|fr1|chrUn (157319150-157319415) | |
| 25-239, gnl|galGal2|chr1 (21475930-21475665) | |
| 25-239, gnl|hg17|chr7 (117044757-117045018) | |
| 25-239, gnl|Hg17|chr7 (117044976-117044768) | |
| 25-239, gnl|loxAfr1|scaffold_1434 (156504-156765) | |
| 25-239, gnl|mm7|chr6 (18388696-18388953) | |
| 25-239, gnl|Mm7|chr6 (18388911-18388706) | |
| 25-239, gnl|monDom2|scaffold_22 (30950826-30950567) | |
| 25-239, gnl|oryCun1|scaffold_198552 (44520-44259) | |
| 25-239, gnl|panTro1|chr6 (119328408-119328669) | |
| 25-239, gnl|rheMac2|chr3 (155135156-155135417) | |
| 25-239, gnl|rn3|chr4 (44424177-44424435) | |
| 25-239, gnl|tetNig1|chr13 (10765146-10765402) | |
| 25-239, gnl|xenTro1|scaffold_17 (2483718-2483966) | |
| 343-1248, gnl|bosTau2|chr3 (27653668-27652763) | |
| 343-1248, gnl|Hg17|chr1 (112710592-112711497) | |
| 343-1248, gnl|Mm7|chr3 (104803317-104802412) |