Non-Coding RNA Search

Ss1.1-Liv1-LVR010106H09.5

Sequence:


               
               AATTTCATTTATTGAAAAGCTGTTGGTTTCAGCTCAGCGACATGTGAGAAGTTGTAGTAT
GACAACAATACCATGGATTTTCCGTGTAAAATTTCATGGCATGAGGAGCAGGTGTGGGAA
TCATGATCCGGAAAAGAGGCTTTGAGGAGGGTGATAAACCGAGAAAGCTGGTGTACCATT
GAGCCATGTCCTGATGCAACATCTCTTTTGGCTCCCACGCAGAGCCCAGATTGTGATAAC
TTCCTGGATGTCGGACTAGGCAGAGAGTGTGCCTCAAAACAAGGTGTACTTAAAAGAGAA
TCTGGGAGTGATTCTGACCTCTTTCACTCACCCATTGAAGAAGTGGACAGCATTATCTTC
TCCAAGCCTGAGGAAGAGCAGTTGGCCTGTGATATCACTGGATCCAGTTCCTCCACCGAT
GACACAGCATCTTTGGATCGACATTCTTCACATGGCAGTGATGTGTCCCTCCCCCAGATT
TCAAATTTGAACAGGTCCAGAGACCAGCAATGTCTTAATGGCTTCTACAGCCATGGGGTG
GGAGCTGAGGGTCGAGAGAGTGAGAGTGAGCCTGCTGGCTCAGGTGAGATGGAAGAGGAG
GAGATGGACAGCATCACCGAAGTACCTGCGAACTGCTCTGTCCTGAGGAGTTCTATGCGC
TCTCTGTCTCCTTTCCGGAGGCACAGCTGGGGTCCTGGGAAGAATGCAGCCAGTGATGCA
GAAATGAACCATCGGAGTTCAATGCGAGTTCTTGGGGATGTTGTCAGGAGACCTCCCATT
CATAGGAGAAGTATGAGCTGGTGTCCTTCTGGTGTGCAATACTCTACTGCCCTGAGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTCATTTATTGAAAAGCTGTTGGTTTCAGCTCAGCGACATGTGAGAAGTTGTAGTAT
GACAACAATACCATGGATTTTCCGTGTAAAATTTCATGGCATGAGGAGCAGGTGTGGGAA
TCATGATCCGGAAAAGAGGCTTTGAGGAGGGTGATAAACCGAGAAAGCTGGTGTACCATT
GAGCCATGTCCTGATGCAACATCTCTTTTGGCTCCCACGCAGAGCCCAGATTGTGATAAC
TTCCTGGATGTCGGACTAGGCAGAGAGTGTGCCTCAAAACAAGGTGTACTTAAAAGAGAA
TCTGGGAGTGATTCTGACCTCTTTCACTCACCCATTGAAGAAGTGGACAGCATTATCTTC
TCCAAGCCTGAGGAAGAGCAGTTGGCCTGTGATATCACTGGATCCAGTTCCTCCACCGAT
GACACAGCATCTTTGGATCGACATTCTTCACATGGCAGTGATGTGTCCCTCCCCCAGATT
TCAAATTTGAACAGGTCCAGAGACCAGCAATGTCTTAATGGCTTCTACAGCCATGGGGTG
GGAGCTGAGGGTCGAGAGAGTGAGAGTGAGCCTGCTGGCTCAGGTGAGATGGAAGAGGAG
GAGATGGACAGCATCACCGAAGTACCTGCGAACTGCTCTGTCCTGAGGAGTTCTATGCGC
TCTCTGTCTCCTTTCCGGAGGCACAGCTGGGGTCCTGGGAAGAATGCAGCCAGTGATGCA
GAAATGAACCATCGGAGTTCAATGCGAGTTCTTGGGGATGTTGTCAGGAGACCTCCCATT
CATAGGAGAAGTATGAGCTGGTGTCCTTCTGGTGTGCAATACTCTACTGCCCTGAGTGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55642577|ref|XP_510568.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55642577|ref|XP_510568.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-680, + strand, RNAz p=0.703258

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-680, + strand, RNAz p=0.703258

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB209414, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB209414, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               365-737, gnl|bosTau2|chr21 (9757539-9757911)
               

               
               365-737, gnl|Hg17|chr15 (83999650-84000022)
               

               
               365-737, gnl|Mm7|chr7 (71529097-71529472)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               365-737, gnl|bosTau2|chr21 (9757539-9757911)
               

               
               365-737, gnl|Hg17|chr15 (83999650-84000022)
               

               
               365-737, gnl|Mm7|chr7 (71529097-71529472)

	365-737, gnl\|bosTau2\|chr21 (9757539-9757911)
	365-737, gnl\|Hg17\|chr15 (83999650-84000022)
	365-737, gnl\|Mm7\|chr7 (71529097-71529472)