Non-Coding RNA Search

Ss1.1-Liv1-LVR01H040091.5

Sequence:


               
               AATATTAATTCTAGACCTCTGCCGCTGAGGCCATCAGAGGATTTAGTCTAACACAAATCA
AGCCTACAAATGAAGAGTTAGAAGCTTCTTATCTTGGGCTGTTTAAATATTTGTACGTAC
ATTAAAGCCAAATTCCTAGTAATGGTAGCAGAGCCGTTTAGTACAGGCAGTATGGGGGAA
ATCTGCTTTCTGGAGAGCAAGGTCAAAAAAAAAAAAAATTCAGACAGTGTTAAGTTAAAA
TGCCAAGCTCCCAAGCATCCTTTTGCATAGGCCTGCCCCCCCACACCCCCTTAGCGCAGT
TCCCCGTTAGATGGCTTTGTTCTCCACTTTGGGACAGATACCCTCCTTCCCTGAATTCCC
AAGGCAGCAGGAAGTTATGCTTAAGGAAATCATGTCAGTCATGCAGATAGGCAGCATCTG
TGGCGGCAAGGGGAGTCACACTTCAAGATGGGCAGAGAGGGAGATTGATCTGTGATCCAG
GAGCCTTCTGATCTAAGAGGGTGCAGGTACAAGACCTTTCTGATAGACCTACACTTCCCC
TCCTTCATCCCCCAGCAAGTCTTCTTCACACTGGGTTTATTTATGGGCTTTTGGTTTTGG
GTGTGAGCGAGGAGCGGTGAAATGAAAGAGGACTCTAGATTAACTGCCTAGATTAATTTC
TGTCCTTTTGGACTCGCTATTGCCAAGATTTTAAGGGGCCTGATAGCTTACCATGGGGGC
ATGTTGTGTTGTTTTTGTTTAAAATAGGTCATGCACCCAGGAATGCAGTCAAACTATAAT
GGTGACTAAGTGCCGGAAAGCTGAGAGGGAGGGGGCCCAAGTGGAAAAATGAGCCTGAGG
CAAGAGAAAGAGGGCTGGGAAAATGGAAGTTCCACCAGGCCCACAGGCCAAGTTAGATAT
TCCTCCATGCATTAACAGCTGTGTCAGAGGTTGATTTACAGGGCACTAATCATTTTGGGG
GGAGCACCCCCACTTTATACCAGTAACTATCGAAGGAACAGCCAAGCAGAGAGCATTTCT
AGGGTGGGAGCAAGAGTCCTTATTGAATTCCCAGGGCACCTGCGCCTGTGTGTTCAGGCA
CTTTGGATGCCTTGTGCTACCAGTGCCCTTTAACTAGACTGTGACAGGTCCCCACACGGA
GGGAGGGATACTGTTTTCAGAGAAAGGAGGTTTTTTTTATTCCTTATCATTTTCCAAGTG
CTGAAGCCCATAATAATACAGATATGATTTAGCCACCACCTAGGGAACTAACCATCAAAA
AGAACTGAACAAACAAAAGGAATAAAAAAGCAGAGTTGATAAGCTGCTTTTAACAAAGTG
GTGATATTTCTCCAGTGAAAGCCAAGTGGAATATTTTTTAAAAGTTGAAATTTGATTTGA
AGGACCAGAGCCACGTATTTCGATTTTGATGGTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATATTAATTCTAGACCTCTGCCGCTGAGGCCATCAGAGGATTTAGTCTAACACAAATCA
AGCCTACAAATGAAGAGTTAGAAGCTTCTTATCTTGGGCTGTTTAAATATTTGTACGTAC
ATTAAAGCCAAATTCCTAGTAATGGTAGCAGAGCCGTTTAGTACAGGCAGTATGGGGGAA
ATCTGCTTTCTGGAGAGCAAGGTCAAAAAAAAAAAAAATTCAGACAGTGTTAAGTTAAAA
TGCCAAGCTCCCAAGCATCCTTTTGCATAGGCCTGCCCCCCCACACCCCCTTAGCGCAGT
TCCCCGTTAGATGGCTTTGTTCTCCACTTTGGGACAGATACCCTCCTTCCCTGAATTCCC
AAGGCAGCAGGAAGTTATGCTTAAGGAAATCATGTCAGTCATGCAGATAGGCAGCATCTG
TGGCGGCAAGGGGAGTCACACTTCAAGATGGGCAGAGAGGGAGATTGATCTGTGATCCAG
GAGCCTTCTGATCTAAGAGGGTGCAGGTACAAGACCTTTCTGATAGACCTACACTTCCCC
TCCTTCATCCCCCAGCAAGTCTTCTTCACACTGGGTTTATTTATGGGCTTTTGGTTTTGG
GTGTGAGCGAGGAGCGGTGAAATGAAAGAGGACTCTAGATTAACTGCCTAGATTAATTTC
TGTCCTTTTGGACTCGCTATTGCCAAGATTTTAAGGGGCCTGATAGCTTACCATGGGGGC
ATGTTGTGTTGTTTTTGTTTAAAATAGGTCATGCACCCAGGAATGCAGTCAAACTATAAT
GGTGACTAAGTGCCGGAAAGCTGAGAGGGAGGGGGCCCAAGTGGAAAAATGAGCCTGAGG
CAAGAGAAAGAGGGCTGGGAAAATGGAAGTTCCACCAGGCCCACAGGCCAAGTTAGATAT
TCCTCCATGCATTAACAGCTGTGTCAGAGGTTGATTTACAGGGCACTAATCATTTTGGGG
GGAGCACCCCCACTTTATACCAGTAACTATCGAAGGAACAGCCAAGCAGAGAGCATTTCT
AGGGTGGGAGCAAGAGTCCTTATTGAATTCCCAGGGCACCTGCGCCTGTGTGTTCAGGCA
CTTTGGATGCCTTGTGCTACCAGTGCCCTTTAACTAGACTGTGACAGGTCCCCACACGGA
GGGAGGGATACTGTTTTCAGAGAAAGGAGGTTTTTTTTATTCCTTATCATTTTCCAAGTG
CTGAAGCCCATAATAATACAGATATGATTTAGCCACCACCTAGGGAACTAACCATCAAAA
AGAACTGAACAAACAAAAGGAATAAAAAAGCAGAGTTGATAAGCTGCTTTTAACAAAGTG
GTGATATTTCTCCAGTGAAAGCCAAGTGGAATATTTTTTAAAAGTTGAAATTTGATTTGA
AGGACCAGAGCCACGTATTTCGATTTTGATGGTTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               514-632, - strand, RNAz p=0.657497
               

               
               989-1100, + strand, RNAz p=0.781378

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               514-632, - strand, RNAz p=0.657497
               

               
               989-1100, + strand, RNAz p=0.781378

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               5-1416, gnl|bosTau2|chr26 (16563367-16561951)
               

               
               5-1416, gnl|Hg17|chr10 (103434536-103432535)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1416, gnl|bosTau2|chr26 (16563367-16561951)
               

               
               5-1416, gnl|Hg17|chr10 (103434536-103432535)

	514-632, - strand, RNAz p=0.657497
	989-1100, + strand, RNAz p=0.781378

	5-1416, gnl\|bosTau2\|chr26 (16563367-16561951)
	5-1416, gnl\|Hg17\|chr10 (103434536-103432535)