Non-Coding RNA Search

Ss1.1-Liv1-LVRM10005B05.5

Sequence:


               
               GTGGTTATCAGGGCACATTTTTTCTAAATCTCAGCATGGACTGAGATTGCATCTGCATTC
TTTCTGCCATGTTTTTACAGTGTGTGCTTCACCGAATTTTTTACATAGTTTTCTACAAGA
TCAGTCCTTCAGATGCGTTCTAATGCTGTGAATGTAAAGAACTCACTTTTGAAAATGTTT
TGCTTTTGTCCACGTCTTCTTAACATACATATTTAATTACAAGGGATGAGGATTAATGGG
GCTTTGGACACTTAAAGCTCTTTTCCTGAGATTAATTTGATTTAGTTACTCCTGAGAGAG
ATGTTTGCGGCCTTGGCGACTTGCCATTTGGATGCGACTGTAAAGAGGAGAGGGGCTCAA
CCACGATTCTGTCAGGTTCAGCTTTTGGCTTTTTCTTTTCCTCCCCACTACACACCCTCC
CCTCTCATTTTCAGCTCATCGCTTTGTTGTCTTGCTTGGGGGTGGAAAGAGGAAAGGTAA
TAGAATTTACCTCTGTGGAGTTCATCTTGTAGCTTGCCGTGTTTACGAAGGAGTCATGCT
GAGTGTGCCTCCTGTACTGTCCAGGAACTCACTGGGACAGAACAATTTCTACAGCCCTGC
TCTCCTAGACTTAAAAAATCCTCACTTGCCTCCTGGGTCCTTTCACCCTGCTGGCCTGTG
TGGAGGCAACTAGCAGGCACAAGCCCACAAAAGAACCCGGACCCCAGGCAGGGGCCAGTA
GGAGTCCCCCTCGCCTAACATTCATCACTCTTAGCCATCCAGTTTTGAGGGCTGAGAGGT
CAGGGAGCCTGTGGGCCGAAGAGGAGGTGGTTCAAGTTCACTGTATTCCTTTTCATTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTTATCAGGGCACATTTTTTCTAAATCTCAGCATGGACTGAGATTGCATCTGCATTC
TTTCTGCCATGTTTTTACAGTGTGTGCTTCACCGAATTTTTTACATAGTTTTCTACAAGA
TCAGTCCTTCAGATGCGTTCTAATGCTGTGAATGTAAAGAACTCACTTTTGAAAATGTTT
TGCTTTTGTCCACGTCTTCTTAACATACATATTTAATTACAAGGGATGAGGATTAATGGG
GCTTTGGACACTTAAAGCTCTTTTCCTGAGATTAATTTGATTTAGTTACTCCTGAGAGAG
ATGTTTGCGGCCTTGGCGACTTGCCATTTGGATGCGACTGTAAAGAGGAGAGGGGCTCAA
CCACGATTCTGTCAGGTTCAGCTTTTGGCTTTTTCTTTTCCTCCCCACTACACACCCTCC
CCTCTCATTTTCAGCTCATCGCTTTGTTGTCTTGCTTGGGGGTGGAAAGAGGAAAGGTAA
TAGAATTTACCTCTGTGGAGTTCATCTTGTAGCTTGCCGTGTTTACGAAGGAGTCATGCT
GAGTGTGCCTCCTGTACTGTCCAGGAACTCACTGGGACAGAACAATTTCTACAGCCCTGC
TCTCCTAGACTTAAAAAATCCTCACTTGCCTCCTGGGTCCTTTCACCCTGCTGGCCTGTG
TGGAGGCAACTAGCAGGCACAAGCCCACAAAAGAACCCGGACCCCAGGCAGGGGCCAGTA
GGAGTCCCCCTCGCCTAACATTCATCACTCTTAGCCATCCAGTTTTGAGGGCTGAGAGGT
CAGGGAGCCTGTGGGCCGAAGAGGAGGTGGTTCAAGTTCACTGTATTCCTTTTCATTGGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-118, - strand, RNAz p=0.763895
               

               
               313-431, - strand, RNAz p=0.988935
               

               
               551-670, - strand, RNAz p=0.855612

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.763895
               

               
               313-431, - strand, RNAz p=0.988935
               

               
               551-670, - strand, RNAz p=0.855612

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               313-431, BP138107 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP138107.1|), blast E-value=0, identity=100% 
               

               
               313-431, BP151793 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP151793.1|), blast E-value=0, identity=100% 
               

               
               313-431, BP165750 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP165750.1|), blast E-value=0, identity=100%

Similar Transcript(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               313-431, BP138107 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP138107.1|), blast E-value=0, identity=100% 
               

               
               313-431, BP151793 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP151793.1|), blast E-value=0, identity=100% 
               

               
               313-431, BP165750 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|BP165750.1|), blast E-value=0, identity=100%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-834, gnl|bosTau2|chr25 (36945460-36946284)
               

               
               1-834, gnl|Hg17|chr7 (5498848-5498107)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-834, gnl|bosTau2|chr25 (36945460-36946284)
               

               
               1-834, gnl|Hg17|chr7 (5498848-5498107)

	1-118, - strand, RNAz p=0.763895
	313-431, - strand, RNAz p=0.988935
	551-670, - strand, RNAz p=0.855612

	313-431, BP138107 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP138107.1\|), blast E-value=0, identity=100%
	313-431, BP151793 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP151793.1\|), blast E-value=0, identity=100%
	313-431, BP165750 full-length enriched swine cDNA library, adult thymus Sus (dbj\|BP165750.1\|), blast E-value=0, identity=100%

	1-834, gnl\|bosTau2\|chr25 (36945460-36946284)
	1-834, gnl\|Hg17\|chr7 (5498848-5498107)