Non-Coding RNA Search

Ss1.1-Liv1-LVRM10020E04.5

Sequence:


               
               TGGAATATAATTCACATTCCTAAAGTTTCCAGTTGTACAAGTAGACTGTGAAGAAAGAAT
CACTTTACTGAAAAACTGCCCCCTCCATTATCTGTGTTGAAGCTAGGAAACCTCTGTGCC
AGAATTTGGAATTTAGTGTGTAGAACTGAAATAACTAACTACAAAGCATATCAGAGGTTC
TGTTTTCTTTTTCTTTATCACTTAATGTTAATAATATATGATGAGGGAGAATAGATTCGT
GATAAAATGGGAGTCATAATTGCTGATATCAGATGACCAGCCCTGGTTCCACAAGGTGAC
CTTCCTGAATCACAGACATGTCTCTGACCTCCTTCCTCCTCTCTCTCTATCTGGGACTCT
GCAGGTGTCTGGTTGAGAAGGGAGATGTGGCCTTTGTGAAGGATCAGGTTGTCCAGCAGA
ACACTGACGGTACGGACACAACCCTTTGTCCCCATACAGCAGGGTGGCTGGTGCACGTGT
GTTCAGGATGTCTTTGTGGAAGTGTCAGGTTCGTCCGTTCTGCGCTGGTCTCTCCCTCGG
TCCTTGCCTACACACAACAAGGATTTGGAGGCCGAAAATCACTGTAGCGGCATCAGGATA
GAGCCAGCGGGCTTTGCCGCACAAGGATGGCGGGAGGTGATCTGGCGGGAGGTTGTTCTG
GCCGGGAGGTGCTGCAGCAGCGCTGGGATAGACCCAGTGGTCTTGCCGCTCAGAGATGAA
GGCAGGCGGTCTCAGCATGGGAGCGGTTCTAAGTCAAGGGAATTTTCCCTCGAACTGACA
CCGTAGTGTAACATCGCAGAGCGCTGATCTTGGTCTGTTAATGAGGCTTTCTGGTCCATC
TCCCCTAGCGAAAAAGGCTCCTGCCATTTGCCTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAATATAATTCACATTCCTAAAGTTTCCAGTTGTACAAGTAGACTGTGAAGAAAGAAT
CACTTTACTGAAAAACTGCCCCCTCCATTATCTGTGTTGAAGCTAGGAAACCTCTGTGCC
AGAATTTGGAATTTAGTGTGTAGAACTGAAATAACTAACTACAAAGCATATCAGAGGTTC
TGTTTTCTTTTTCTTTATCACTTAATGTTAATAATATATGATGAGGGAGAATAGATTCGT
GATAAAATGGGAGTCATAATTGCTGATATCAGATGACCAGCCCTGGTTCCACAAGGTGAC
CTTCCTGAATCACAGACATGTCTCTGACCTCCTTCCTCCTCTCTCTCTATCTGGGACTCT
GCAGGTGTCTGGTTGAGAAGGGAGATGTGGCCTTTGTGAAGGATCAGGTTGTCCAGCAGA
ACACTGACGGTACGGACACAACCCTTTGTCCCCATACAGCAGGGTGGCTGGTGCACGTGT
GTTCAGGATGTCTTTGTGGAAGTGTCAGGTTCGTCCGTTCTGCGCTGGTCTCTCCCTCGG
TCCTTGCCTACACACAACAAGGATTTGGAGGCCGAAAATCACTGTAGCGGCATCAGGATA
GAGCCAGCGGGCTTTGCCGCACAAGGATGGCGGGAGGTGATCTGGCGGGAGGTTGTTCTG
GCCGGGAGGTGCTGCAGCAGCGCTGGGATAGACCCAGTGGTCTTGCCGCTCAGAGATGAA
GGCAGGCGGTCTCAGCATGGGAGCGGTTCTAAGTCAAGGGAATTTTCCCTCGAACTGACA
CCGTAGTGTAACATCGCAGAGCGCTGATCTTGGTCTGTTAATGAGGCTTTCTGGTCCATC
TCCCCTAGCGAAAAAGGCTCCTGCCATTTGCCTTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               293-406, - strand, RNAz p=0.575622

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               293-406, - strand, RNAz p=0.575622

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               293-509, gnl|bosTau2|chr1 (88642183-88641967)
               

               
               293-509, gnl|Hg17|chr3 (134971975-134972207)
               

               
               293-509, gnl|Mm7|chr9 (102929430-102929205)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               293-509, gnl|bosTau2|chr1 (88642183-88641967)
               

               
               293-509, gnl|Hg17|chr3 (134971975-134972207)
               

               
               293-509, gnl|Mm7|chr9 (102929430-102929205)

	293-509, gnl\|bosTau2\|chr1 (88642183-88641967)
	293-509, gnl\|Hg17\|chr3 (134971975-134972207)
	293-509, gnl\|Mm7\|chr9 (102929430-102929205)