Ss1.1-Liv1-LVRM10022F05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAAGTCACGTGCTATGACAGCCGCCGGGGTGAGGCCGCCGTTGTCGCTCAGGCTGGTT GGGGCTGTGACTGTGGGAGGCGCCGGTGCGATGGCGGTAGAGACGCTGTCCCCGGACTGG GAGTTCGACCGCGTTGACGACGGCTCACAGAAAATTCATGCTGAAGTCCAACTTAAGAAT TATGGAAAATTTCTTGAGGAGTATACCTCTCAGTTGAGAAGAATTGAGGATGCACTGGAT GATTCAATTGGAGATGTTTGGGATTTCAATCTTGATCCCATAGCATTAAAGCTTTTGCCT TATGAACAGTCTTCTCTTTTGGAACTCATAAAAACTGAAAATAAGGTCTTAAACAAAGTC ATCACTGTTTATGCCGCACTTTGTTGTGAAATCAAGAAATTAAAATATGAGGCTGAAACT AAATTTTATAATGGTCTCTTGTTTTATGGAGAAGGAGCTACAGATTCTAGCATGGTGGAA GGTGATTGCCAAATTCAAATGGGGAGATTTATTTCATTCTTACAGGAACTGTCTTGTTTT GTTACGAGGTGCTATGAAGTGGTGATGAATGTAGTCCATCAGTTGGCTGCCCTCTATATC AGTAACAAGATTGCACCCAAAATTATAGAGACAACTGGAGTTCATTTTCAGACTATGTAT GAGCACCTGGGAGAGCTGCTAACAATTTTGCTTACCCTGGATGAAATTATTGATAATCAT ATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCATCACAAT CCTTCAAAATTTGGAATTCAAGAAGAAAAACTAAAGCCATTTGAAAAGTTCTTGCTGAAA CTAGAAGGGCAGTTACTTGATGGAATGATATTTCAGGCCTGTATAGAACAGCAGTTTGAT TCTCTCAATGGAGGAATATCTGTGTCAAAAAATAGCACTTTTGCTGAAGAATTTGCACAT AGTATTCGCTCAATTTTTGCAAATGTAGAAGCTAAACTTGGGGAACCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAAGTCACGTGCTATGACAGCCGCCGGGGTGAGGCCGCCGTTGTCGCTCAGGCTGGTT GGGGCTGTGACTGTGGGAGGCGCCGGTGCGATGGCGGTAGAGACGCTGTCCCCGGACTGG GAGTTCGACCGCGTTGACGACGGCTCACAGAAAATTCATGCTGAAGTCCAACTTAAGAAT TATGGAAAATTTCTTGAGGAGTATACCTCTCAGTTGAGAAGAATTGAGGATGCACTGGAT GATTCAATTGGAGATGTTTGGGATTTCAATCTTGATCCCATAGCATTAAAGCTTTTGCCT TATGAACAGTCTTCTCTTTTGGAACTCATAAAAACTGAAAATAAGGTCTTAAACAAAGTC ATCACTGTTTATGCCGCACTTTGTTGTGAAATCAAGAAATTAAAATATGAGGCTGAAACT AAATTTTATAATGGTCTCTTGTTTTATGGAGAAGGAGCTACAGATTCTAGCATGGTGGAA GGTGATTGCCAAATTCAAATGGGGAGATTTATTTCATTCTTACAGGAACTGTCTTGTTTT GTTACGAGGTGCTATGAAGTGGTGATGAATGTAGTCCATCAGTTGGCTGCCCTCTATATC AGTAACAAGATTGCACCCAAAATTATAGAGACAACTGGAGTTCATTTTCAGACTATGTAT GAGCACCTGGGAGAGCTGCTAACAATTTTGCTTACCCTGGATGAAATTATTGATAATCAT ATCACACTGAAAGACCACTGGACTATGTACAAAAGGTTACTGAAATCTGTCCATCACAAT CCTTCAAAATTTGGAATTCAAGAAGAAAAACTAAAGCCATTTGAAAAGTTCTTGCTGAAA CTAGAAGGGCAGTTACTTGATGGAATGATATTTCAGGCCTGTATAGAACAGCAGTTTGAT TCTCTCAATGGAGGAATATCTGTGTCAAAAAATAGCACTTTTGCTGAAGAATTTGCACAT AGTATTCGCTCAATTTTTGCAAATGTAGAAGCTAAACTTGGGGAACCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 152-270, + strand, RNAz p=0.844137 | |
| 760-877, + strand, RNAz p=0.970698 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 152-270, + strand, RNAz p=0.844137 | |
| 760-877, + strand, RNAz p=0.970698 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-151, gnl|bosTau2|chr2 (18865114-18864964) | |
| 1-151, gnl|Hg17|chr12 (104003956-104004106) | |
| 1-151, gnl|Mm7|chr10 (83085461-83085611) | |
| 152-294, gnl|bosTau2|chr2 (18862037-18861895) | |
| 152-294, gnl|canFam2|chr10 (36422889-36422689) | |
| 152-294, gnl|danRer3|chr25 (24331742-24331548) | |
| 152-294, gnl|dasNov1|scaffold_27852 (9042-9246) | |
| 152-294, gnl|echTel1|scaffold_324400 (2764-2967) | |
| 152-294, gnl|fr1|chrUn (314213958-314213757) | |
| 152-294, gnl|galGal2|chr1 (50992769-50992585) | |
| 152-294, gnl|hg17|chr12 (104007321-104007521) | |
| 152-294, gnl|Hg17|chr12 (104007370-104007512) | |
| 152-294, gnl|loxAfr1|scaffold_31366 (48157-48353) | |
| 152-294, gnl|mm7|chr10 (83088250-83088445) | |
| 152-294, gnl|Mm7|chr10 (83088294-83088436) | |
| 152-294, gnl|monDom2|scaffold_34 (8124648-8124456) | |
| 152-294, gnl|oryCun1|scaffold_191797 (671-875) | |
| 152-294, gnl|panTro1|chr10 (106514285-106514485) | |
| 152-294, gnl|rheMac2|chr11 (106243869-106244069) | |
| 152-294, gnl|rn3|chr7 (22401452-22401258) | |
| 152-294, gnl|tetNig1|chr13 (6373067-6372877) | |
| 152-294, gnl|xenTro1|scaffold_434 (768138-768341) | |
| 753-877, gnl|bosTau2|chr2 (18852335-18852211) | |
| 753-877, gnl|canFam2|chr10 (36413732-36413593) | |
| 753-877, gnl|danRer3|chr25 (24320695-24320563) | |
| 753-877, gnl|echTel1|scaffold_324400 (13881-14021) | |
| 753-877, gnl|fr1|chrUn (6880933-6880811) | |
| 753-877, gnl|galGal2|chr1 (50983202-50983061) | |
| 753-877, gnl|hg17|chr12 (104018354-104018494) | |
| 753-877, gnl|Hg17|chr12 (104018360-104018484) | |
| 753-877, gnl|loxAfr1|scaffold_195033 (516-656) | |
| 753-877, gnl|mm7|chr10 (83098303-83098443) | |
| 753-877, gnl|Mm7|chr10 (83098309-83098433) | |
| 753-877, gnl|monDom2|scaffold_34 (8109782-8109648) | |
| 753-877, gnl|oryCun1|scaffold_199776 (107815-107675) | |
| 753-877, gnl|panTro1|chr10 (106525332-106525472) | |
| 753-877, gnl|rn3|chr7 (22390859-22390719) | |
| 753-877, gnl|tetNig1|chr13 (6371361-6371229) | |
| 753-877, gnl|xenTro1|scaffold_434 (776653-776786) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-151, gnl|bosTau2|chr2 (18865114-18864964) | |
| 1-151, gnl|Hg17|chr12 (104003956-104004106) | |
| 1-151, gnl|Mm7|chr10 (83085461-83085611) | |
| 152-294, gnl|bosTau2|chr2 (18862037-18861895) | |
| 152-294, gnl|canFam2|chr10 (36422889-36422689) | |
| 152-294, gnl|danRer3|chr25 (24331742-24331548) | |
| 152-294, gnl|dasNov1|scaffold_27852 (9042-9246) | |
| 152-294, gnl|echTel1|scaffold_324400 (2764-2967) | |
| 152-294, gnl|fr1|chrUn (314213958-314213757) | |
| 152-294, gnl|galGal2|chr1 (50992769-50992585) | |
| 152-294, gnl|hg17|chr12 (104007321-104007521) | |
| 152-294, gnl|Hg17|chr12 (104007370-104007512) | |
| 152-294, gnl|loxAfr1|scaffold_31366 (48157-48353) | |
| 152-294, gnl|mm7|chr10 (83088250-83088445) | |
| 152-294, gnl|Mm7|chr10 (83088294-83088436) | |
| 152-294, gnl|monDom2|scaffold_34 (8124648-8124456) | |
| 152-294, gnl|oryCun1|scaffold_191797 (671-875) | |
| 152-294, gnl|panTro1|chr10 (106514285-106514485) | |
| 152-294, gnl|rheMac2|chr11 (106243869-106244069) | |
| 152-294, gnl|rn3|chr7 (22401452-22401258) | |
| 152-294, gnl|tetNig1|chr13 (6373067-6372877) | |
| 152-294, gnl|xenTro1|scaffold_434 (768138-768341) | |
| 753-877, gnl|bosTau2|chr2 (18852335-18852211) | |
| 753-877, gnl|canFam2|chr10 (36413732-36413593) | |
| 753-877, gnl|danRer3|chr25 (24320695-24320563) | |
| 753-877, gnl|echTel1|scaffold_324400 (13881-14021) | |
| 753-877, gnl|fr1|chrUn (6880933-6880811) | |
| 753-877, gnl|galGal2|chr1 (50983202-50983061) | |
| 753-877, gnl|hg17|chr12 (104018354-104018494) | |
| 753-877, gnl|Hg17|chr12 (104018360-104018484) | |
| 753-877, gnl|loxAfr1|scaffold_195033 (516-656) | |
| 753-877, gnl|mm7|chr10 (83098303-83098443) | |
| 753-877, gnl|Mm7|chr10 (83098309-83098433) | |
| 753-877, gnl|monDom2|scaffold_34 (8109782-8109648) | |
| 753-877, gnl|oryCun1|scaffold_199776 (107815-107675) | |
| 753-877, gnl|panTro1|chr10 (106525332-106525472) | |
| 753-877, gnl|rn3|chr7 (22390859-22390719) | |
| 753-877, gnl|tetNig1|chr13 (6371361-6371229) | |
| 753-877, gnl|xenTro1|scaffold_434 (776653-776786) |