Non-Coding RNA Search

Ss1.1-Liv1-LVRM10023G07.5

Sequence:


               
               ATTGCGGGCAGGTGGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGACAT
GAGGGCAGAGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTC
CAGGGTCCACTGCCTCCCAGCAGATGACCTTGACTCAAAGATTGTGACCCTGAAGGACCA
GATCACGAAGCTGCCAGCGCACAAAAACGCCGTTGTCTCCAGCAACACCGACTTCGCCTT
CAGCCTCTACAAGCAGCTGGCTCTGGCCGCACGCAGAGAAAATGTCTTCTTCTCCCCGCT
GAGCGTCTCCATGGCCTTGGCCTTCCTGTCCTTGGGAGCCCGAGGCACCACCCTGACAGA
GCTCCTGGAAGGCCTCAAGTTCAATGTCACAGAGACCCCTGAGGCAGAAATCCACCAGGG
TTTCCAGCACCTCCTGAGGACGCTCAACAGGCCGAGCAACCTGCTGCAGCTGAGGTTGGG
CAACGCCATGTTCATTGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCA
TGAGCTGTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCAGAGG
ACTCATTAATGACTATGTGAAGAACAAAACTGAGGGGAAAATCGTGGAGTTGATCAAGAA
GCTTTCCCCTCAGACCGTGGCCGTCCTGGTGAATTACATTTACTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCGGGCAGGTGGCGGCTCTGGGTCCACTCAGCGCATCCCGCTCTGCGAGGCAGACAT
GAGGGCAGAGGGAATGTCCCTCTTCCTGGCTCTGGGCCTCCTGGTGGCTGGGCTCTGCTC
CAGGGTCCACTGCCTCCCAGCAGATGACCTTGACTCAAAGATTGTGACCCTGAAGGACCA
GATCACGAAGCTGCCAGCGCACAAAAACGCCGTTGTCTCCAGCAACACCGACTTCGCCTT
CAGCCTCTACAAGCAGCTGGCTCTGGCCGCACGCAGAGAAAATGTCTTCTTCTCCCCGCT
GAGCGTCTCCATGGCCTTGGCCTTCCTGTCCTTGGGAGCCCGAGGCACCACCCTGACAGA
GCTCCTGGAAGGCCTCAAGTTCAATGTCACAGAGACCCCTGAGGCAGAAATCCACCAGGG
TTTCCAGCACCTCCTGAGGACGCTCAACAGGCCGAGCAACCTGCTGCAGCTGAGGTTGGG
CAACGCCATGTTCATTGATGAGCATCTGAAGCTGCTGGACAAGTTCGTCCAAGATGCCCA
TGAGCTGTACCACTCCGAGGCCTTCCCCACTAACTTCCAGGATTTAGAAGCTGCCAGAGG
ACTCATTAATGACTATGTGAAGAACAAAACTGAGGGGAAAATCGTGGAGTTGATCAAGAA
GCTTTCCCCTCAGACCGTGGCCGTCCTGGTGAATTACATTTACTTTAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9GMA6_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9GMA6_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               257-376, - strand, RNAz p=0.99221
               

               
               417-536, - strand, RNAz p=0.573101

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-376, - strand, RNAz p=0.99221
               

               
               417-536, - strand, RNAz p=0.573101

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               156-708, gnl|bosTau2|chr21 (40655117-40654571)
               

               
               156-708, gnl|Hg17|chr14 (94150605-94151172)
               

               
               156-708, gnl|Mm7|chr12 (101883462-101884032)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-708, gnl|bosTau2|chr21 (40655117-40654571)
               

               
               156-708, gnl|Hg17|chr14 (94150605-94151172)
               

               
               156-708, gnl|Mm7|chr12 (101883462-101884032)

	257-376, - strand, RNAz p=0.99221
	417-536, - strand, RNAz p=0.573101

	156-708, gnl\|bosTau2\|chr21 (40655117-40654571)
	156-708, gnl\|Hg17\|chr14 (94150605-94151172)
	156-708, gnl\|Mm7\|chr12 (101883462-101884032)