Non-Coding RNA Search

Ss1.1-Liv1-LVRM10025B11.5

Sequence:


               
               AGGTACCATTATATGGTGGGTGATTTCCTTACTAAACTGAGTGTGAGTGCCCAGACTTCC
CCAGCAGAGAAGGGCCTGAATCCGGGGCTATTGTGCCAGGAAAGTTACACGTGCAGGGGG
ACCGATGAAGCTGTCTTCGAGTGTGATGAGTGCTGTAGTCTGCAGTGTCTCCGCTGCGAG
GAGGAGCTCCATCGGCAGGAGCGCCTGAGAAACCATGAGCGGATCAGACTCAAAGCCGGC
CATGTCCCTTACTGTGACCCCTGCAAGGGCCCCAATGGGCATTCCCCAGGTATGAAGCAG
AGGGCAGTGGTGAGGTGCCAGACCTGTAAAATCAACTTGTGCCTGGAGTGCCAGAAGAGG
ACTCATTCTGGGGGTAGCAAAAGGAGGCATCCCGTTACTGTGTACCATGTTGCTAAGGTC
CAGGAGTTGCTGGAGGACGAAGGGATGGATGAGGAGACCAAGAGGAAGAAGATGACTGAG
AAGGTTGTGAGTTTCCTCCTAGTAGATGAAAATGAAGAGATCCAGGTAACAAATGAAGAG
GATTTTATTAGGAAATTGGACTGCAAACCTGATCAGCATCTGAAGGTGGTTTCTATTTTT
GGAAATACTGGGGATGGGAAGTCTCATACCCTCAACCACACTTTCTTTTATGGCCGGGAA
GTCTTCAAAACCTCCCCCGCCCAGGAGTCCTGCACTGTGGGAGTGTGGGCAGCATATGAC
CCGGTCCACAAAGTAGCAGTGATAGACACGGAAGGGCTCTTGGGAGCTACAGTGAATCTA
AGCCAGAGAACACGGCTGCTGCTTAAGGTCCTGGCCATCTCAGACCTCGTCATCTATCGA
ACTCACGCAGACCGACTGCACAACGACCTCTTCAAGTTCCTTGGGGATGCCTCAGAGGCT
TATCTGAAGCACTTCACCAAGGAGCTCAAGGCTACCACTGCCCGCTGTGGCCTGGATGTC
CCCTTGTCCACCCTGGGCCCTGCGGTTATCATTTTCCATGAGACTGTGCACACTCAGCTG
CTGGGCTCTGATCACCCCTCCGAGGTGCCCGAGAAGCTCATCCAGGACCGGTTCCGGAAG
CTGGGCCGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTACCATTATATGGTGGGTGATTTCCTTACTAAACTGAGTGTGAGTGCCCAGACTTCC
CCAGCAGAGAAGGGCCTGAATCCGGGGCTATTGTGCCAGGAAAGTTACACGTGCAGGGGG
ACCGATGAAGCTGTCTTCGAGTGTGATGAGTGCTGTAGTCTGCAGTGTCTCCGCTGCGAG
GAGGAGCTCCATCGGCAGGAGCGCCTGAGAAACCATGAGCGGATCAGACTCAAAGCCGGC
CATGTCCCTTACTGTGACCCCTGCAAGGGCCCCAATGGGCATTCCCCAGGTATGAAGCAG
AGGGCAGTGGTGAGGTGCCAGACCTGTAAAATCAACTTGTGCCTGGAGTGCCAGAAGAGG
ACTCATTCTGGGGGTAGCAAAAGGAGGCATCCCGTTACTGTGTACCATGTTGCTAAGGTC
CAGGAGTTGCTGGAGGACGAAGGGATGGATGAGGAGACCAAGAGGAAGAAGATGACTGAG
AAGGTTGTGAGTTTCCTCCTAGTAGATGAAAATGAAGAGATCCAGGTAACAAATGAAGAG
GATTTTATTAGGAAATTGGACTGCAAACCTGATCAGCATCTGAAGGTGGTTTCTATTTTT
GGAAATACTGGGGATGGGAAGTCTCATACCCTCAACCACACTTTCTTTTATGGCCGGGAA
GTCTTCAAAACCTCCCCCGCCCAGGAGTCCTGCACTGTGGGAGTGTGGGCAGCATATGAC
CCGGTCCACAAAGTAGCAGTGATAGACACGGAAGGGCTCTTGGGAGCTACAGTGAATCTA
AGCCAGAGAACACGGCTGCTGCTTAAGGTCCTGGCCATCTCAGACCTCGTCATCTATCGA
ACTCACGCAGACCGACTGCACAACGACCTCTTCAAGTTCCTTGGGGATGCCTCAGAGGCT
TATCTGAAGCACTTCACCAAGGAGCTCAAGGCTACCACTGCCCGCTGTGGCCTGGATGTC
CCCTTGTCCACCCTGGGCCCTGCGGTTATCATTTTCCATGAGACTGTGCACACTCAGCTG
CTGGGCTCTGATCACCCCTCCGAGGTGCCCGAGAAGCTCATCCAGGACCGGTTCCGGAAG
CTGGGCCGCTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61833089|ref|XP_609499.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833089|ref|XP_609499.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               564-723, - strand, RNAz p=0.947665
               

               
               804-1030, - strand, RNAz p=0.997351

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               564-723, - strand, RNAz p=0.947665
               

               
               804-1030, - strand, RNAz p=0.997351

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               524-1030, gnl|bosTau2|chr10 (59518529-59518023)
               

               
               524-1030, gnl|canFam2|chr8 (49414999-49415444)
               

               
               524-1030, gnl|danRer3|chr20 (38378751-38379196)
               

               
               524-1030, gnl|echTel1|scaffold_110646 (809-364)
               

               
               524-1030, gnl|fr1|chrUn (156732434-156731901)
               

               
               524-1030, gnl|galGal2|chr5 (23695672-23695227)
               

               
               524-1030, gnl|hg17|chr14 (72534268-72534713)
               

               
               524-1030, gnl|Hg17|chr14 (72534778-72534272)
               

               
               524-1030, gnl|loxAfr1|scaffold_128452 (5427-4980)
               

               
               524-1030, gnl|mm7|chr12 (81570665-81571110)
               

               
               524-1030, gnl|Mm7|chr12 (81571175-81570669)
               

               
               524-1030, gnl|monDom2|scaffold_8 (62290794-62290349)
               

               
               524-1030, gnl|oryCun1|scaffold_193849 (17589-17144)
               

               
               524-1030, gnl|panTro1|chr15 (72311643-72312088)
               

               
               524-1030, gnl|rheMac2|chr7 (136092349-136092794)
               

               
               524-1030, gnl|rn3|chr6 (107526736-107527181)
               

               
               524-1030, gnl|tetNig1|chr14 (6649271-6649797)
               

               
               524-1030, gnl|xenTro1|scaffold_218 (1659398-1659843)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               524-1030, gnl|bosTau2|chr10 (59518529-59518023)
               

               
               524-1030, gnl|canFam2|chr8 (49414999-49415444)
               

               
               524-1030, gnl|danRer3|chr20 (38378751-38379196)
               

               
               524-1030, gnl|echTel1|scaffold_110646 (809-364)
               

               
               524-1030, gnl|fr1|chrUn (156732434-156731901)
               

               
               524-1030, gnl|galGal2|chr5 (23695672-23695227)
               

               
               524-1030, gnl|hg17|chr14 (72534268-72534713)
               

               
               524-1030, gnl|Hg17|chr14 (72534778-72534272)
               

               
               524-1030, gnl|loxAfr1|scaffold_128452 (5427-4980)
               

               
               524-1030, gnl|mm7|chr12 (81570665-81571110)
               

               
               524-1030, gnl|Mm7|chr12 (81571175-81570669)
               

               
               524-1030, gnl|monDom2|scaffold_8 (62290794-62290349)
               

               
               524-1030, gnl|oryCun1|scaffold_193849 (17589-17144)
               

               
               524-1030, gnl|panTro1|chr15 (72311643-72312088)
               

               
               524-1030, gnl|rheMac2|chr7 (136092349-136092794)
               

               
               524-1030, gnl|rn3|chr6 (107526736-107527181)
               

               
               524-1030, gnl|tetNig1|chr14 (6649271-6649797)
               

               
               524-1030, gnl|xenTro1|scaffold_218 (1659398-1659843)

	564-723, - strand, RNAz p=0.947665
	804-1030, - strand, RNAz p=0.997351

	524-1030, gnl\|bosTau2\|chr10 (59518529-59518023)
	524-1030, gnl\|canFam2\|chr8 (49414999-49415444)
	524-1030, gnl\|danRer3\|chr20 (38378751-38379196)
	524-1030, gnl\|echTel1\|scaffold_110646 (809-364)
	524-1030, gnl\|fr1\|chrUn (156732434-156731901)
	524-1030, gnl\|galGal2\|chr5 (23695672-23695227)
	524-1030, gnl\|hg17\|chr14 (72534268-72534713)
	524-1030, gnl\|Hg17\|chr14 (72534778-72534272)
	524-1030, gnl\|loxAfr1\|scaffold_128452 (5427-4980)
	524-1030, gnl\|mm7\|chr12 (81570665-81571110)
	524-1030, gnl\|Mm7\|chr12 (81571175-81570669)
	524-1030, gnl\|monDom2\|scaffold_8 (62290794-62290349)
	524-1030, gnl\|oryCun1\|scaffold_193849 (17589-17144)
	524-1030, gnl\|panTro1\|chr15 (72311643-72312088)
	524-1030, gnl\|rheMac2\|chr7 (136092349-136092794)
	524-1030, gnl\|rn3\|chr6 (107526736-107527181)
	524-1030, gnl\|tetNig1\|chr14 (6649271-6649797)
	524-1030, gnl\|xenTro1\|scaffold_218 (1659398-1659843)