Non-Coding RNA Search

Ss1.1-Liv1-LVRM10028G12.5

Sequence:


               
               CAACTGGTAATTATGTCCTTAGAAGCTTTAAAAGGACTGTGTTGTTACAAAAGCAGAGAC
CAAGCTTACTTTTTCTGAACTGTATGCACTGGGGTTGTTTGTTAGATAAACTTGTTTCAA
TAAATAGGGGTCAAGGGAGAGGTTCACGTTCCTGGAAGACTTGGGTTCTGACTCCCTGAT
AAGTGGAAGTGGTTGCCTTTCTCTCCTTTTTCACTTTGAAGCCCAAGCTCGGCAGCAGCT
GAAGTCAGCTCTGGCTCCCACTTCCTGTCAGACAGGAAATCACTTCCTTAGCCAAAATTA
CAAGCTGTGGCCAAACTCCCCAGCCACACCGAAAAGAGCCTGTTTTTTCCCAGAAGACCG
TGTTTCTAGATGCGGAAGCATAAATCGGTATGCCATGTGGTCCTGGTGTGCCCGAAATAC
CCAGGGAAGAGGGTGCTGGGAGGAGGAGGCCGCCTCTCCGAGGCGAGGGCACCGTGGGGG
CACCCTGGGCTTTGCTGCTCTGCTTGAAGCGAGGGGGCCCTGTTGGGTGGCCAACTGCCC
CATGAGGATGAGTCTGTCGCTGCCATGGGAAGCCCTGGCCTCATGTCTAGGCGAGGGCTC
CCATTGTTTGTTTGGGAGCCCTGAGCTCTTGAGAGTGGCCTCAGGTAAGCTTGCTTAGCT
TAGGGCACAGGTTCCATTGTCAAGCTTTGTGCGTCTGTTTCCCCTCTTTCCCTTTACCTA
TTGCCCAGGAGCTCAAGGACACTTTCTTTCCCAGAAAGTTCTCAAGAAGCTGATTTCAGG
AGGCAGTCCAGTGACTTTCGGGGCTGCTGGCTGGCATGCCCCTCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACTGGTAATTATGTCCTTAGAAGCTTTAAAAGGACTGTGTTGTTACAAAAGCAGAGAC
CAAGCTTACTTTTTCTGAACTGTATGCACTGGGGTTGTTTGTTAGATAAACTTGTTTCAA
TAAATAGGGGTCAAGGGAGAGGTTCACGTTCCTGGAAGACTTGGGTTCTGACTCCCTGAT
AAGTGGAAGTGGTTGCCTTTCTCTCCTTTTTCACTTTGAAGCCCAAGCTCGGCAGCAGCT
GAAGTCAGCTCTGGCTCCCACTTCCTGTCAGACAGGAAATCACTTCCTTAGCCAAAATTA
CAAGCTGTGGCCAAACTCCCCAGCCACACCGAAAAGAGCCTGTTTTTTCCCAGAAGACCG
TGTTTCTAGATGCGGAAGCATAAATCGGTATGCCATGTGGTCCTGGTGTGCCCGAAATAC
CCAGGGAAGAGGGTGCTGGGAGGAGGAGGCCGCCTCTCCGAGGCGAGGGCACCGTGGGGG
CACCCTGGGCTTTGCTGCTCTGCTTGAAGCGAGGGGGCCCTGTTGGGTGGCCAACTGCCC
CATGAGGATGAGTCTGTCGCTGCCATGGGAAGCCCTGGCCTCATGTCTAGGCGAGGGCTC
CCATTGTTTGTTTGGGAGCCCTGAGCTCTTGAGAGTGGCCTCAGGTAAGCTTGCTTAGCT
TAGGGCACAGGTTCCATTGTCAAGCTTTGTGCGTCTGTTTCCCCTCTTTCCCTTTACCTA
TTGCCCAGGAGCTCAAGGACACTTTCTTTCCCAGAAAGTTCTCAAGAAGCTGATTTCAGG
AGGCAGTCCAGTGACTTTCGGGGCTGCTGGCTGGCATGCCCCTCCAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-382, - strand, RNAz p=0.872215

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-382, - strand, RNAz p=0.872215

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               206-329, - strand, RNAmicro p=0.993824

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               206-329, - strand, RNAmicro p=0.993824

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-583, gnl|bosTau2|chr26 (22385012-22385567)
               

               
               1-583, gnl|Hg17|chr10 (114810097-114810667)
               

               
               1-583, gnl|Mm7|chr19 (55753905-55754458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-583, gnl|bosTau2|chr26 (22385012-22385567)
               

               
               1-583, gnl|Hg17|chr10 (114810097-114810667)
               

               
               1-583, gnl|Mm7|chr19 (55753905-55754458)

	1-583, gnl\|bosTau2\|chr26 (22385012-22385567)
	1-583, gnl\|Hg17\|chr10 (114810097-114810667)
	1-583, gnl\|Mm7\|chr19 (55753905-55754458)