Non-Coding RNA Search

Ss1.1-Liv1-LVRM10029E09.5

Sequence:


               
               ATAGTCCTGGGTATGAGAAAGCTGGTGAGGAGATAGGAACGGGTCTAGATGTGAATGGGG
GACGGTCGGCCCGAAGGGCGCGGGCCCCCCTACGCCTGCGCCACCCCACGCCCCCCGTGC
CCCCTCACCGGCTGGGAAGCGTCGCCGCCGCCGCTGCCGCCGCCACCTCCACCGCCACAG
CCCCGCCTCGCGCACTCTCGGCGCGCGCCGCGGGAGGGATCCACGCTGTACTCCGATTGG
CTGCCTGCTGGCCAACCATCTCTGAGGACGGCGGATATTGGTGAGCATGAAGCGGACGGG
CAGCCCTTGCAGCCAATAACTGGGGGATAGAGGCGGGGCTGTTGGGAGAGGCTGCGGGTC
CCGGGGGTGCCCTGCTGGGTGTGAGGAGCTGGGAGGCGAGGGCCTGTAGGCAGGCGAAGA
TTGGAGCCCTCGGAGAAGATGGGCAGCCCCAAGGACCAATCGCTTGGGAGAAAGGGCGGG
GCTCCAAAGAAGCTGGCGCGACTGGCAGCGAGGAACGGAGGGCGTAGCCCGGAGGGCGAC
GGAGATTGGCTGCGAAGCCAAAGACAGGCAGGGCCGGCGGCCAGTCGCGAGGGCCGTGGG
CGGTGCGCCCTGGACCAGACTTTGGAGCAAAGGAGGTGTAGAGTTTGGCCCTGAGCACTG
TGGCCCGAGGTGGCCTTGGGAGTCTGGCGTAGGGTCCCCTCANGCTGTGGCAAAGTCAGG
CTCTCTGGCCACCCAGTGCAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGTCCTGGGTATGAGAAAGCTGGTGAGGAGATAGGAACGGGTCTAGATGTGAATGGGG
GACGGTCGGCCCGAAGGGCGCGGGCCCCCCTACGCCTGCGCCACCCCACGCCCCCCGTGC
CCCCTCACCGGCTGGGAAGCGTCGCCGCCGCCGCTGCCGCCGCCACCTCCACCGCCACAG
CCCCGCCTCGCGCACTCTCGGCGCGCGCCGCGGGAGGGATCCACGCTGTACTCCGATTGG
CTGCCTGCTGGCCAACCATCTCTGAGGACGGCGGATATTGGTGAGCATGAAGCGGACGGG
CAGCCCTTGCAGCCAATAACTGGGGGATAGAGGCGGGGCTGTTGGGAGAGGCTGCGGGTC
CCGGGGGTGCCCTGCTGGGTGTGAGGAGCTGGGAGGCGAGGGCCTGTAGGCAGGCGAAGA
TTGGAGCCCTCGGAGAAGATGGGCAGCCCCAAGGACCAATCGCTTGGGAGAAAGGGCGGG
GCTCCAAAGAAGCTGGCGCGACTGGCAGCGAGGAACGGAGGGCGTAGCCCGGAGGGCGAC
GGAGATTGGCTGCGAAGCCAAAGACAGGCAGGGCCGGCGGCCAGTCGCGAGGGCCGTGGG
CGGTGCGCCCTGGACCAGACTTTGGAGCAAAGGAGGTGTAGAGTTTGGCCCTGAGCACTG
TGGCCCGAGGTGGCCTTGGGAGTCTGGCGTAGGGTCCCCTCANGCTGTGGCAAAGTCAGG
CTCTCTGGCCACCCAGTGCAGAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               510-655, - strand, RNAz p=0.97405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               510-655, - strand, RNAz p=0.97405

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_178526, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_178526, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               64-744, gnl|bosTau2|chr7 (2486814-2486127)
               

               
               64-744, gnl|Hg17|chr19 (19035920-19035239)
               

               
               64-744, gnl|Mm7|chr8 (68667392-68668198)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-744, gnl|bosTau2|chr7 (2486814-2486127)
               

               
               64-744, gnl|Hg17|chr19 (19035920-19035239)
               

               
               64-744, gnl|Mm7|chr8 (68667392-68668198)

	64-744, gnl\|bosTau2\|chr7 (2486814-2486127)
	64-744, gnl\|Hg17\|chr19 (19035920-19035239)
	64-744, gnl\|Mm7\|chr8 (68667392-68668198)