Non-Coding RNA Search

Ss1.1-Liv1-LVRM10029H05.5

Sequence:


               
               GCCGGGCTCGTGCCAGACCCCCGTCTCTCACCTCATGGAGCCCACAGCCCATTGAGGACG
ACCGGGTAGTAAATAACGAAGCACTAAAACCCTATAAAATCACAAGGAAAGAAGAGGGTC
GCAAAGAAATGAACGGGGAACTATTGGAATATCGGGACCGACCTCCTTTAGATCGATGTC
TGGGAAAGTCATTTCCGAGCAAGTGACCTGAAGGGTGATCTTGAGCAGCTGCTCTGGGCC
GAGATCTCGGTGTATCTCCCTAGCTCCTCGTTCAGGAGCCCTGCGGAGGCTCGGCTGGAA
GGCCCCGGGCGGGGGCGGAGCCATCTTCTCAGCAAAACCCGGAAAGCGGAAGCCGAGGCC
CGGCTGCACCGTGGTCTGCGGAGCTGCAGTTGCCCAGGTCTCGGCCGGCTGAGTCACGGC
CCTGCCGGGCCCGGCCTAGCGAGGACGCGCCCCCAAGCAGCTGCCAGCCGAGCCCTGGGG
GCTCTGCACTTGACTTTTCCAGTCGGGCACAAAGCCTTTTGCCGTTGCCGTGGCGACTAG
CAACCTGGCGAAGACCCCTTTCACTTTCTATCCCCCTCCTTTCCCAGCTCCTTCTTTGCT
TATCTTGGGGTCAGTCCGATGACCCTATAGGTCTGGCTAGCAGGGCGCCGGCTCTCTGGC
AACAGACTGCCCTCCTCCGGGCGCTGGGCGGCCGGCTACTTCTCAGGCTGGGGCGGCCTC
GGCAGTCTCCATGGTAACGGCCCCGCCGGCGTCTCAGCCTGGGAGGGAAGATGCTGCCTG
CCGGGCCCGCTCCCTTGCCCCCGGCCTCACGGCCGGGCAGGGGCCACTGAGGAAGAAGGT
CCCGGCCGCCGGACTTCGGGGCAGGGGGCACCAGTGAAATCCCATTCTCTGGCTGGAGAC
ACAGATGGCCTCAAATGAGAGAGATGCTATATCGTGGTACCAAAAGAAGATTGGAGCATA
TGATCAGCAGATATGGGAAAAGTCGATCGAACAGACTCAGATTAAGGTAAATTGATTTCT
TTGATGTTTTAGCTTTGTTTTGGTGTATCAATGTGAAGAGTGGATTGTACTTGCTTTTTT
AAAAATCTACTTATCCATCAAGTATGGCGTTCTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGCTCGTGCCAGACCCCCGTCTCTCACCTCATGGAGCCCACAGCCCATTGAGGACG
ACCGGGTAGTAAATAACGAAGCACTAAAACCCTATAAAATCACAAGGAAAGAAGAGGGTC
GCAAAGAAATGAACGGGGAACTATTGGAATATCGGGACCGACCTCCTTTAGATCGATGTC
TGGGAAAGTCATTTCCGAGCAAGTGACCTGAAGGGTGATCTTGAGCAGCTGCTCTGGGCC
GAGATCTCGGTGTATCTCCCTAGCTCCTCGTTCAGGAGCCCTGCGGAGGCTCGGCTGGAA
GGCCCCGGGCGGGGGCGGAGCCATCTTCTCAGCAAAACCCGGAAAGCGGAAGCCGAGGCC
CGGCTGCACCGTGGTCTGCGGAGCTGCAGTTGCCCAGGTCTCGGCCGGCTGAGTCACGGC
CCTGCCGGGCCCGGCCTAGCGAGGACGCGCCCCCAAGCAGCTGCCAGCCGAGCCCTGGGG
GCTCTGCACTTGACTTTTCCAGTCGGGCACAAAGCCTTTTGCCGTTGCCGTGGCGACTAG
CAACCTGGCGAAGACCCCTTTCACTTTCTATCCCCCTCCTTTCCCAGCTCCTTCTTTGCT
TATCTTGGGGTCAGTCCGATGACCCTATAGGTCTGGCTAGCAGGGCGCCGGCTCTCTGGC
AACAGACTGCCCTCCTCCGGGCGCTGGGCGGCCGGCTACTTCTCAGGCTGGGGCGGCCTC
GGCAGTCTCCATGGTAACGGCCCCGCCGGCGTCTCAGCCTGGGAGGGAAGATGCTGCCTG
CCGGGCCCGCTCCCTTGCCCCCGGCCTCACGGCCGGGCAGGGGCCACTGAGGAAGAAGGT
CCCGGCCGCCGGACTTCGGGGCAGGGGGCACCAGTGAAATCCCATTCTCTGGCTGGAGAC
ACAGATGGCCTCAAATGAGAGAGATGCTATATCGTGGTACCAAAAGAAGATTGGAGCATA
TGATCAGCAGATATGGGAAAAGTCGATCGAACAGACTCAGATTAAGGTAAATTGATTTCT
TTGATGTTTTAGCTTTGTTTTGGTGTATCAATGTGAAGAGTGGATTGTACTTGCTTTTTT
AAAAATCTACTTATCCATCAAGTATGGCGTTCTTTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               557-715, - strand, RNAz p=0.91689
               

               
               607-719, - strand, RNAz p=0.877952

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               557-715, - strand, RNAz p=0.91689
               

               
               607-719, - strand, RNAz p=0.877952

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-874, gnl|bosTau2|chr3 (24525144-24526022)
               

               
               1-874, gnl|canFam2|chr17 (54649207-54649926)
               

               
               1-874, gnl|dasNov1|scaffold_117504 (5090-4372)
               

               
               1-874, gnl|hg17|chr1 (114013502-114014241)
               

               
               1-874, gnl|Hg17|chr1 (114014537-114013687)
               

               
               1-874, gnl|loxAfr1|scaffold_6006 (67814-67060)
               

               
               1-874, gnl|mm7|chr3 (103762932-103762306)
               

               
               1-874, gnl|monDom2|scaffold_0 (1410694-1410047)
               

               
               1-874, gnl|oryCun1|scaffold_207708 (25385-26102)
               

               
               1-874, gnl|panTro1|chr1 (113800734-113801470)
               

               
               1-874, gnl|rheMac2|chr1 (116742914-116743684)
               

               
               1-874, gnl|rn3|chr2 (199165292-199164686)
               


               
               948-1116, gnl|bosTau2|chr3 (24527013-24527189)
               

               
               948-1116, gnl|Hg17|chr1 (114012421-114012255)
               

               
               948-1116, gnl|Mm7|chr3 (103763736-103763886)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-874, gnl|bosTau2|chr3 (24525144-24526022)
               

               
               1-874, gnl|canFam2|chr17 (54649207-54649926)
               

               
               1-874, gnl|dasNov1|scaffold_117504 (5090-4372)
               

               
               1-874, gnl|hg17|chr1 (114013502-114014241)
               

               
               1-874, gnl|Hg17|chr1 (114014537-114013687)
               

               
               1-874, gnl|loxAfr1|scaffold_6006 (67814-67060)
               

               
               1-874, gnl|mm7|chr3 (103762932-103762306)
               

               
               1-874, gnl|monDom2|scaffold_0 (1410694-1410047)
               

               
               1-874, gnl|oryCun1|scaffold_207708 (25385-26102)
               

               
               1-874, gnl|panTro1|chr1 (113800734-113801470)
               

               
               1-874, gnl|rheMac2|chr1 (116742914-116743684)
               

               
               1-874, gnl|rn3|chr2 (199165292-199164686)
               


               
               948-1116, gnl|bosTau2|chr3 (24527013-24527189)
               

               
               948-1116, gnl|Hg17|chr1 (114012421-114012255)
               

               
               948-1116, gnl|Mm7|chr3 (103763736-103763886)

	557-715, - strand, RNAz p=0.91689
	607-719, - strand, RNAz p=0.877952

	1-874, gnl\|bosTau2\|chr3 (24525144-24526022)
	1-874, gnl\|canFam2\|chr17 (54649207-54649926)
	1-874, gnl\|dasNov1\|scaffold_117504 (5090-4372)
	1-874, gnl\|hg17\|chr1 (114013502-114014241)
	1-874, gnl\|Hg17\|chr1 (114014537-114013687)
	1-874, gnl\|loxAfr1\|scaffold_6006 (67814-67060)
	1-874, gnl\|mm7\|chr3 (103762932-103762306)
	1-874, gnl\|monDom2\|scaffold_0 (1410694-1410047)
	1-874, gnl\|oryCun1\|scaffold_207708 (25385-26102)
	1-874, gnl\|panTro1\|chr1 (113800734-113801470)
	1-874, gnl\|rheMac2\|chr1 (116742914-116743684)
	1-874, gnl\|rn3\|chr2 (199165292-199164686)

	948-1116, gnl\|bosTau2\|chr3 (24527013-24527189)
	948-1116, gnl\|Hg17\|chr1 (114012421-114012255)
	948-1116, gnl\|Mm7\|chr3 (103763736-103763886)