Non-Coding RNA Search

Ss1.1-Liv1-LVRM10031F07.5

Sequence:


               
               AGTTGGGGAGCTGGGACCAGGGGAATGTCCCGGCCCGAGTTCGCTAGGACTCCCACTCTG
TTCCGCTCATCTCTGCCGCTGTCAGCAGGGCCTGAGGTTCGCCGCTTTACGAAATGGCCG
AACAGTCCGACAAAGCCGTGAAGTATTACACCCTGGAAGAGATCCAGAAGCACAACAACA
GCAAGAGCACCTGGCTAATCCTGCACCACAAAGTGTACGATTTGACCAAATTTTTGGAGG
AGGTGAGTTTGTGAGGCAGGATGCTGGCCTAAGTTTGGGGGGTTGCCTGCCAAGACCTGT
CGTTTGCAGCATGTCGGGATAGACCTGCACGCCTCTATATCCGCACCTGTGTGCGCACCC
GGGAGTGTTTGCTGAGTCTGCACACCTGGGAGCGGACCCTGAGTTTGTACACTTGGGTCT
GCGTGCCTCCGTGTGCATCCCCGGAGGCTGCACACCTGTGTATGCACACCTGAGGGCGAC
CGAGGGTGCGTAAGTTAGTTCTGCGGCTGGATCAGCGGTTTTAGCAGTCTGCAGCCCTCC
CTTGTAGGGCAGGGACTGCCTCCGGAGACCCTGCGCGGGCGTGTAAGAAAGAACCATTTT
GAACTTAGAGGGAAACTGAATCGCATCTGGAGCTGCCTTCCTAAGAGCTCAACCACGGAA
GGATTTTAAAGATCTTTTATCCTTGAGTTTACACAAACCAGGGCTTCATCTAGGACAGGG
GTCCTCCCACTTATTATTTCTGGAGTGGATTCCTAATTGGACCCAGTTGGAGATCACCCA
CCCCGAGAGCTGCTCTCCCCCTGGCACCTACAAGCCAGCCCCACCATCCATGCCCACCAT
CTAGAAGGCGCCCAGTGATTGTAAAGGTATCTAATGATAACTTCAGTGAGGTACAGTATT
GGACTCCTTCGAGTCAGTGTGGCGGGCTGTGTGTGGCTTTGATGAAGAGAGGAAGAGGGA
CAGAGAAGTAAAAATTGCCAGTGGGACTTGATCCTTAAGCAACTTTGGAAATTGTAAAAA
TAACTTTGCTTAACTTAGAGGAGAACATTCCTTTGATAAGATTCTTTGCATTAGATTATA
ATTTTTGCAGTAAATATTGAGTCCCCCCTCCCCCAACTCTGGCTGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTGGGGAGCTGGGACCAGGGGAATGTCCCGGCCCGAGTTCGCTAGGACTCCCACTCTG
TTCCGCTCATCTCTGCCGCTGTCAGCAGGGCCTGAGGTTCGCCGCTTTACGAAATGGCCG
AACAGTCCGACAAAGCCGTGAAGTATTACACCCTGGAAGAGATCCAGAAGCACAACAACA
GCAAGAGCACCTGGCTAATCCTGCACCACAAAGTGTACGATTTGACCAAATTTTTGGAGG
AGGTGAGTTTGTGAGGCAGGATGCTGGCCTAAGTTTGGGGGGTTGCCTGCCAAGACCTGT
CGTTTGCAGCATGTCGGGATAGACCTGCACGCCTCTATATCCGCACCTGTGTGCGCACCC
GGGAGTGTTTGCTGAGTCTGCACACCTGGGAGCGGACCCTGAGTTTGTACACTTGGGTCT
GCGTGCCTCCGTGTGCATCCCCGGAGGCTGCACACCTGTGTATGCACACCTGAGGGCGAC
CGAGGGTGCGTAAGTTAGTTCTGCGGCTGGATCAGCGGTTTTAGCAGTCTGCAGCCCTCC
CTTGTAGGGCAGGGACTGCCTCCGGAGACCCTGCGCGGGCGTGTAAGAAAGAACCATTTT
GAACTTAGAGGGAAACTGAATCGCATCTGGAGCTGCCTTCCTAAGAGCTCAACCACGGAA
GGATTTTAAAGATCTTTTATCCTTGAGTTTACACAAACCAGGGCTTCATCTAGGACAGGG
GTCCTCCCACTTATTATTTCTGGAGTGGATTCCTAATTGGACCCAGTTGGAGATCACCCA
CCCCGAGAGCTGCTCTCCCCCTGGCACCTACAAGCCAGCCCCACCATCCATGCCCACCAT
CTAGAAGGCGCCCAGTGATTGTAAAGGTATCTAATGATAACTTCAGTGAGGTACAGTATT
GGACTCCTTCGAGTCAGTGTGGCGGGCTGTGTGTGGCTTTGATGAAGAGAGGAAGAGGGA
CAGAGAAGTAAAAATTGCCAGTGGGACTTGATCCTTAAGCAACTTTGGAAATTGTAAAAA
TAACTTTGCTTAACTTAGAGGAGAACATTCCTTTGATAAGATTCTTTGCATTAGATTATA
ATTTTTGCAGTAAATATTGAGTCCCCCCTCCCCCAACTCTGGCTGTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               346-456, - strand, RNAz p=0.660914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-456, - strand, RNAz p=0.660914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-458, gnl|bosTau2|chr24 (3792420-3791967)
               

               
               8-458, gnl|Hg17|chr18 (70110187-70109728)
               

               
               8-458, gnl|Mm7|chr18 (85200505-85200923)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-458, gnl|bosTau2|chr24 (3792420-3791967)
               

               
               8-458, gnl|Hg17|chr18 (70110187-70109728)
               

               
               8-458, gnl|Mm7|chr18 (85200505-85200923)

	8-458, gnl\|bosTau2\|chr24 (3792420-3791967)
	8-458, gnl\|Hg17\|chr18 (70110187-70109728)
	8-458, gnl\|Mm7\|chr18 (85200505-85200923)