Ss1.1-Liv1-LVRM10050B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTTCCATGAAAGCGCCTGAAATACTAAGTTACCTTTTTTTTCAGGTGAGCTCGAGAAA GCCCTGCGCTCGCTCTAGTGAGTGGCAGCTGAGAACTTTGGGCTCCGTAGGAAGAAGGAA GGGAAGTTGGGAAGGTCTTTGGACCTTGTGGCTTGGCTGTCTTCCTCATGGCTTCACCCA GCCGCCCCGGCAATGACTGCTCCCATGTTATTGATCACAGCCATGTTCCTGAATTCGAGG TAGCTACCTGGATCAAAATCACACTCATCCTACTGTTCCTGGTCATCTTTGTGGTGGGCA TCCTGGGGAATAGTGTCACGATTCGGGTCACCCAGGTGCTGCAGAAGAAAGGCTACCTGC AGAAGGAGGTGACAGACCACATGGTGAGCCTGGCTTGCTCCGACATCCTGGTCTTCCTCA TTGGTATGCCCGTGGAGTTCTACAGCATCATCTGGAACCCCCTGACCACGCCCAGCTACA CCGTATCCTGTAAGCTTCACTCTTTCCTCTTCGAGACCTGCAGCTACGCTACGCTGCTGC ACGTGCTGACGCTCAGCTTCGAGCGCTACATCGCCATCTGCCACCCCTTCAGGTATAAGG CCATGTCTGGGCCCTGCCAGGTGAAGCTGCTGATTGGCTTTGTCTGGGTCACCTCCGCCC TGGTGGCCTTGCCTTTGCTTTTTGCCATGGGAGTTGAATACCCCTTGGTGGACGTGCCCA GTCACCGGGGGCTCTCTTGCAACCGCTCTCGCAACCACCACTCCGAGCACCCGGAGACCT CCAACATGTCCGTCTGCACCAACCTCTCTAGCCGTTGGACTGTGTTCCAGTCTAGCATCT TTGGTGCCTTCATCATCTACTTGGTGGTCCTGGTCTCCGTGGCCTTCATGTGCTGGAGCA TGATGCAGGCGCTCCAGAGGAGCAAGCAGGGCACGCTGGCCGCCAAAGGGCAGCAGCTGC AGCTGAGGAAGTCCGAAAGCGAGGAGAGCAGGAGCGCCCGAAGGCAGACCATCATCTTCC TGAGGCTGATCGTTGTGACCCTGGCCATCTGCTGGATGCCTAACCAGATTCGGAGGATGA TGGCTGCGGCCAAACCCAAGCAGGACTGGACCAAGGCCTATTTCAAGGCATACATGATCC TCCTCCCCTTCTCGGACACTTTCTTCTACCTGAGCTCCGTGGTCAACCCGCTGCTGTACA ACGTGTCCTCGCAGCAGTTCCGCAGTGTGTTTGCGCAGGTCCTGCGCTGCCGCCTGACGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTTCCATGAAAGCGCCTGAAATACTAAGTTACCTTTTTTTTCAGGTGAGCTCGAGAAA GCCCTGCGCTCGCTCTAGTGAGTGGCAGCTGAGAACTTTGGGCTCCGTAGGAAGAAGGAA GGGAAGTTGGGAAGGTCTTTGGACCTTGTGGCTTGGCTGTCTTCCTCATGGCTTCACCCA GCCGCCCCGGCAATGACTGCTCCCATGTTATTGATCACAGCCATGTTCCTGAATTCGAGG TAGCTACCTGGATCAAAATCACACTCATCCTACTGTTCCTGGTCATCTTTGTGGTGGGCA TCCTGGGGAATAGTGTCACGATTCGGGTCACCCAGGTGCTGCAGAAGAAAGGCTACCTGC AGAAGGAGGTGACAGACCACATGGTGAGCCTGGCTTGCTCCGACATCCTGGTCTTCCTCA TTGGTATGCCCGTGGAGTTCTACAGCATCATCTGGAACCCCCTGACCACGCCCAGCTACA CCGTATCCTGTAAGCTTCACTCTTTCCTCTTCGAGACCTGCAGCTACGCTACGCTGCTGC ACGTGCTGACGCTCAGCTTCGAGCGCTACATCGCCATCTGCCACCCCTTCAGGTATAAGG CCATGTCTGGGCCCTGCCAGGTGAAGCTGCTGATTGGCTTTGTCTGGGTCACCTCCGCCC TGGTGGCCTTGCCTTTGCTTTTTGCCATGGGAGTTGAATACCCCTTGGTGGACGTGCCCA GTCACCGGGGGCTCTCTTGCAACCGCTCTCGCAACCACCACTCCGAGCACCCGGAGACCT CCAACATGTCCGTCTGCACCAACCTCTCTAGCCGTTGGACTGTGTTCCAGTCTAGCATCT TTGGTGCCTTCATCATCTACTTGGTGGTCCTGGTCTCCGTGGCCTTCATGTGCTGGAGCA TGATGCAGGCGCTCCAGAGGAGCAAGCAGGGCACGCTGGCCGCCAAAGGGCAGCAGCTGC AGCTGAGGAAGTCCGAAAGCGAGGAGAGCAGGAGCGCCCGAAGGCAGACCATCATCTTCC TGAGGCTGATCGTTGTGACCCTGGCCATCTGCTGGATGCCTAACCAGATTCGGAGGATGA TGGCTGCGGCCAAACCCAAGCAGGACTGGACCAAGGCCTATTTCAAGGCATACATGATCC TCCTCCCCTTCTCGGACACTTTCTTCTACCTGAGCTCCGTGGTCAACCCGCTGCTGTACA ACGTGTCCTCGCAGCAGTTCCGCAGTGTGTTTGCGCAGGTCCTGCGCTGCCGCCTGACGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 153-268, - strand, RNAz p=0.696141 | |
| 789-988, + strand, RNAz p=0.767088 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 153-268, - strand, RNAz p=0.696141 | |
| 789-988, + strand, RNAz p=0.767088 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-1024, gnl|bosTau2|chr2 (42315404-42316428) | |
| 1-1024, gnl|Hg17|chr2 (133008177-133009204) | |
| 1-1024, gnl|Mm7|chr1 (125555644-125556663) | |
| 274-691, gnl|bosTau2|chr13 (35784943-35784526) | |
| 274-691, gnl|canFam2|chr24 (49623588-49623910) | |
| 274-691, gnl|danRer3|chr23 (18853054-18853376) | |
| 274-691, gnl|dasNov1|scaffold_4681 (4328-4650) | |
| 274-691, gnl|echTel1|scaffold_115051 (568-245) | |
| 274-691, gnl|fr1|chrUn (190121783-190121461) | |
| 274-691, gnl|galGal2|chr9 (14650647-14650337) | |
| 274-691, gnl|hg17|chr20 (60811211-60811533) | |
| 274-691, gnl|Hg17|chr20 (60811210-60811627) | |
| 274-691, gnl|loxAfr1|scaffold_223827 (848-526) | |
| 274-691, gnl|mm7|chr2 (181001537-181001859) | |
| 274-691, gnl|Mm7|chr2 (181001536-181001953) | |
| 274-691, gnl|monDom2|scaffold_1 (181362892-181363214) | |
| 274-691, gnl|oryCun1|scaffold_190175 (8581-8902) | |
| 274-691, gnl|panTro1|chr21 (63826777-63827099) | |
| 274-691, gnl|rheMac2|chr10 (1703695-1703320) | |
| 274-691, gnl|rn3|chr3 (169474197-169474519) | |
| 274-691, gnl|tetNig1|chrUn_random (84311455-84311133) | |
| 274-691, gnl|xenTro1|scaffold_8474 (3249-2927) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-1024, gnl|bosTau2|chr2 (42315404-42316428) | |
| 1-1024, gnl|Hg17|chr2 (133008177-133009204) | |
| 1-1024, gnl|Mm7|chr1 (125555644-125556663) | |
| 274-691, gnl|bosTau2|chr13 (35784943-35784526) | |
| 274-691, gnl|canFam2|chr24 (49623588-49623910) | |
| 274-691, gnl|danRer3|chr23 (18853054-18853376) | |
| 274-691, gnl|dasNov1|scaffold_4681 (4328-4650) | |
| 274-691, gnl|echTel1|scaffold_115051 (568-245) | |
| 274-691, gnl|fr1|chrUn (190121783-190121461) | |
| 274-691, gnl|galGal2|chr9 (14650647-14650337) | |
| 274-691, gnl|hg17|chr20 (60811211-60811533) | |
| 274-691, gnl|Hg17|chr20 (60811210-60811627) | |
| 274-691, gnl|loxAfr1|scaffold_223827 (848-526) | |
| 274-691, gnl|mm7|chr2 (181001537-181001859) | |
| 274-691, gnl|Mm7|chr2 (181001536-181001953) | |
| 274-691, gnl|monDom2|scaffold_1 (181362892-181363214) | |
| 274-691, gnl|oryCun1|scaffold_190175 (8581-8902) | |
| 274-691, gnl|panTro1|chr21 (63826777-63827099) | |
| 274-691, gnl|rheMac2|chr10 (1703695-1703320) | |
| 274-691, gnl|rn3|chr3 (169474197-169474519) | |
| 274-691, gnl|tetNig1|chrUn_random (84311455-84311133) | |
| 274-691, gnl|xenTro1|scaffold_8474 (3249-2927) |