Non-Coding RNA Search

Ss1.1-Liv1-LVRM10053F03.5

Sequence:


               
               CAGTCTCCCGCCGCCGCCGCTGCTGCCGGACGCACAGAGAGAGAGGGGCTGCTGGGCAGA
TCGCTGCCGGCTGAGCGAGCTAGCGAGCGCGGGGTCGCCGTGTAGGGGGCGTTCCCAGCC
GGGACGCAGGTCGCAGCGTTGCCCTTGGCGAGCATCCGGATCTCAGGCTGTCTGTGTGGA
CCCCAGAGCGGCCCTCACCACCATGACGGGGCTGCTGAAGAGGAAGTTTGACCAGCTGGA
TGAGGACTCATCTTCGCTCTGCTCGTCCTCCTCTTTGTCTTCCTCGGGCCGCTGCTCTCC
TGCCTGCTCCCCGAGCTCTTCAGTCTCGCCGGCCTGGGACTCGGACGAGGAGAGCCCCTG
GGATCAGATGCCCTTGCCTGACCGTGACTTCTGTTGCCCCCGAAGTTTCACCCCCCTGTC
CATCCTGAAGCGGGCCCCCCGGAAGCGCCCAGGTCGTGTGGCCTTTGATGGCATCACCGT
CTTCTACTTCCCTCGGTGCCAGGGCTTCACCAGTGTGCCCAGCCGTGGTGGCTGCACTCT
GGGTATGGCCCCCCGCCACAGTGCCTGCCGCCGCTTCTCCCTGGCCGAGTTTACGCAGGA
GCAAGCCCGGGCACGGCATGAGAAGCTGCGCCTACGCTTGAAGGAAGAGAAGCTGGAGGC
ACTGCAACGGAAGCTTTCGGAGGCTGGGGTACCCAAGACGGAGGCTGGCCTGTCGCTTAC
AGTGGACTCCATAGATGATGCTTCTGTGGAGGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTCTCCCGCCGCCGCCGCTGCTGCCGGACGCACAGAGAGAGAGGGGCTGCTGGGCAGA
TCGCTGCCGGCTGAGCGAGCTAGCGAGCGCGGGGTCGCCGTGTAGGGGGCGTTCCCAGCC
GGGACGCAGGTCGCAGCGTTGCCCTTGGCGAGCATCCGGATCTCAGGCTGTCTGTGTGGA
CCCCAGAGCGGCCCTCACCACCATGACGGGGCTGCTGAAGAGGAAGTTTGACCAGCTGGA
TGAGGACTCATCTTCGCTCTGCTCGTCCTCCTCTTTGTCTTCCTCGGGCCGCTGCTCTCC
TGCCTGCTCCCCGAGCTCTTCAGTCTCGCCGGCCTGGGACTCGGACGAGGAGAGCCCCTG
GGATCAGATGCCCTTGCCTGACCGTGACTTCTGTTGCCCCCGAAGTTTCACCCCCCTGTC
CATCCTGAAGCGGGCCCCCCGGAAGCGCCCAGGTCGTGTGGCCTTTGATGGCATCACCGT
CTTCTACTTCCCTCGGTGCCAGGGCTTCACCAGTGTGCCCAGCCGTGGTGGCTGCACTCT
GGGTATGGCCCCCCGCCACAGTGCCTGCCGCCGCTTCTCCCTGGCCGAGTTTACGCAGGA
GCAAGCCCGGGCACGGCATGAGAAGCTGCGCCTACGCTTGAAGGAAGAGAAGCTGGAGGC
ACTGCAACGGAAGCTTTCGGAGGCTGGGGTACCCAAGACGGAGGCTGGCCTGTCGCTTAC
AGTGGACTCCATAGATGATGCTTCTGTGGAGGAGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               240-359, - strand, RNAz p=0.999983
               

               
               555-673, + strand, RNAz p=0.861806

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.999983
               

               
               555-673, + strand, RNAz p=0.861806

Similar Transcript(s): 4 entry(ies)

More info

Similar Transcript(s): 4 entry(ies)

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               240-359, BP139905 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP139905.1|), blast E-value=0, identity=100% 
               

               
               240-359, BP442948 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP442948.1|), blast E-value=0, identity=98.33% 
               

               
               240-357, 530151 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM288751.1|), 
blast E-value=4e-23, identity=87.29% 
               

               
               240-359, LIB4216-018-R1-K1-G8 LIB4216 Canis familiaris cDNA clone 
(gb|DN422314.1|), blast E-value=0.000000000000002, identity=84.55%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               240-359, BP139905 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP139905.1|), blast E-value=0, identity=100% 
               

               
               240-359, BP442948 full-length enriched swine cDNA library, adult liver Sus 
(dbj|BP442948.1|), blast E-value=0, identity=98.33% 
               

               
               240-357, 530151 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM288751.1|), 
blast E-value=4e-23, identity=87.29% 
               

               
               240-359, LIB4216-018-R1-K1-G8 LIB4216 Canis familiaris cDNA clone 
(gb|DN422314.1|), blast E-value=0.000000000000002, identity=84.55%

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               164-411, gnl|bosTau2|chr22 (9895821-9895573)
               

               
               164-411, gnl|Hg17|chr3 (39163220-39162975)
               

               
               164-411, gnl|Mm7|chr9 (119673143-119672899)
               


               
               414-673, gnl|bosTau2|chr22 (9890899-9890640)
               

               
               414-673, gnl|Hg17|chr3 (39161751-39161492)
               

               
               414-673, gnl|Mm7|chr9 (119670308-119670049)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               164-411, gnl|bosTau2|chr22 (9895821-9895573)
               

               
               164-411, gnl|Hg17|chr3 (39163220-39162975)
               

               
               164-411, gnl|Mm7|chr9 (119673143-119672899)
               


               
               414-673, gnl|bosTau2|chr22 (9890899-9890640)
               

               
               414-673, gnl|Hg17|chr3 (39161751-39161492)
               

               
               414-673, gnl|Mm7|chr9 (119670308-119670049)

	240-359, - strand, RNAz p=0.999983
	555-673, + strand, RNAz p=0.861806

	240-359, BP139905 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP139905.1\|), blast E-value=0, identity=100%
	240-359, BP442948 full-length enriched swine cDNA library, adult liver Sus (dbj\|BP442948.1\|), blast E-value=0, identity=98.33%
	240-357, 530151 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM288751.1\|), blast E-value=4e-23, identity=87.29%
	240-359, LIB4216-018-R1-K1-G8 LIB4216 Canis familiaris cDNA clone (gb\|DN422314.1\|), blast E-value=0.000000000000002, identity=84.55%

	164-411, gnl\|bosTau2\|chr22 (9895821-9895573)
	164-411, gnl\|Hg17\|chr3 (39163220-39162975)
	164-411, gnl\|Mm7\|chr9 (119673143-119672899)

	414-673, gnl\|bosTau2\|chr22 (9890899-9890640)
	414-673, gnl\|Hg17\|chr3 (39161751-39161492)
	414-673, gnl\|Mm7\|chr9 (119670308-119670049)