Non-Coding RNA Search

Ss1.1-Liv1-LVRM10053F07.5

Sequence:


               
               CAGAAGTGAGCCGGGCCGGGCCGAGCCGGACCCGGGCGCGCGTGCGCGGAGGCCTCCAGG
ACCCGCTGCCCGTGGCGCCCAGCCATGAGGTGGCCGCCCTGCTCCCGCCCCCTGCTGGGG
GTCTGTGCCCTCATCTCCTTGGCCCTCCTGGGGCACGTCCTGCTCCACGACTTCCTGGTG
GTCCCCCGAGAGCTGCGCAGCTTCTCCCAAGAGCCCGAGGAGATGTACAAAGCTCGCCGG
CCCGGAGCCAGCAGCCCGGGGCCCCAGCCCGGCCCAGGGCACCGTGGCAGTCCCAGCGCT
GTGCCCACACGGTGCGACCTACCCCCCAACAGCCGCTTCGACTGCGCCCCAGACAAGGCC
ATCACCCAGGAGCAGTGTGAGGCCCGGGGCTGCTGCTACGTGCCTGCAGGGCCAGGGCCA
CTGGGCGCCCAGATGGGGCAGCCCTGGTGCTTCTTCCCTCCCAGCTACCCCAGTTACAGG
CTGGAGAACCTGACCACCACCGAGACGGGCTACACGGCCACCCTGACCCGCGCCACCCCG
ACCTTCTTCCCCAAGGACGTCATGACCTTACTGCTGGACGTGCTGCTGGAGACTGAGAGC
CGTCTCCACTTCACGATCAAAGATCCCAACAATAGGCGCTACGAGGTGCCCTTGGAGACC
CCGCGTGTCCGCAGCCGGGCACCCTCACACTCTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAAGTGAGCCGGGCCGGGCCGAGCCGGACCCGGGCGCGCGTGCGCGGAGGCCTCCAGG
ACCCGCTGCCCGTGGCGCCCAGCCATGAGGTGGCCGCCCTGCTCCCGCCCCCTGCTGGGG
GTCTGTGCCCTCATCTCCTTGGCCCTCCTGGGGCACGTCCTGCTCCACGACTTCCTGGTG
GTCCCCCGAGAGCTGCGCAGCTTCTCCCAAGAGCCCGAGGAGATGTACAAAGCTCGCCGG
CCCGGAGCCAGCAGCCCGGGGCCCCAGCCCGGCCCAGGGCACCGTGGCAGTCCCAGCGCT
GTGCCCACACGGTGCGACCTACCCCCCAACAGCCGCTTCGACTGCGCCCCAGACAAGGCC
ATCACCCAGGAGCAGTGTGAGGCCCGGGGCTGCTGCTACGTGCCTGCAGGGCCAGGGCCA
CTGGGCGCCCAGATGGGGCAGCCCTGGTGCTTCTTCCCTCCCAGCTACCCCAGTTACAGG
CTGGAGAACCTGACCACCACCGAGACGGGCTACACGGCCACCCTGACCCGCGCCACCCCG
ACCTTCTTCCCCAAGGACGTCATGACCTTACTGCTGGACGTGCTGCTGGAGACTGAGAGC
CGTCTCCACTTCACGATCAAAGATCCCAACAATAGGCGCTACGAGGTGCCCTTGGAGACC
CCGCGTGTCCGCAGCCGGGCACCCTCACACTCTACA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               189-308, - strand, RNAz p=0.568828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-308, - strand, RNAz p=0.568828

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               85-615, gnl|bosTau2|chr19 (47210386-47210889)
               

               
               85-615, gnl|Hg17|chr17 (75692984-75693526)
               

               
               85-615, gnl|Mm7|chr11 (119379178-119379723)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               85-615, gnl|bosTau2|chr19 (47210386-47210889)
               

               
               85-615, gnl|Hg17|chr17 (75692984-75693526)
               

               
               85-615, gnl|Mm7|chr11 (119379178-119379723)

	85-615, gnl\|bosTau2\|chr19 (47210386-47210889)
	85-615, gnl\|Hg17\|chr17 (75692984-75693526)
	85-615, gnl\|Mm7\|chr11 (119379178-119379723)