Non-Coding RNA Search

Ss1.1-Liv1-LVRM10064C03.5

Sequence:


               
               ACCAGGCGCCGCTTCCAGCGCGCAATCAGGGCGCAGCCTGGGAACCGGAGCGCGGCGCAG
CCTGCCACTCAGCCCGGGCTGGGGGAGCCGCTGGGCCCGCCTCGGTGCCAGAAAAAGGGG
GGAAACGACGCGATCCGGGTCAAACAAAAGACTGCGAGGACCGGGCGGCGGGAGGGCGAC
TACCTGCTGAAGCCGCGTCGCCGGCGGCCGTGCACACACACATGCCCGGCCGGTCTTTGA
GGTCCTGCGACTGATCACCGCTCAGATTACGGGCATTTCAGCCCCTGCTCGTCTGCCTTT
GATCTGCAGGGTTCATGTTCTTTTCCTGGGTTGGGAGTTTCGTCTGGGCATGTGCTGACA
GATATTTGGGGGAAGGTAGAAGCATTTGGCACAGAAGTGCTGCCAAGGAGAAAGCCGGTT
GCCGAAAAGGGCGAGTCCTGGAAAGCGTTCAGCACGTTGAAGGGCTCTGCACCCAGGAAG
ACCCCGAAGAAGAGCCATGGCTTTCAAAGCGCTGCCGGAACAACAGAAAGTGTTTCTCAT
GGTTGTCGTTCTCCTAGGCTGCCTGGCGTGTACGGTGCTCTGTGAAACAGGGGACTGCGG
GCAGCAGGAGTTCAGGGATCGGTCGGGAAACTGTGCCCTCTGCCAGCAGTGCGGGCCCGG
CATGGAGCTGTCCAAGGAATGTGGCTTTGGCTACGGGGAGGATGCCCAGTGTGTGAGGTG
CCGGCCGCACAGGTTCAAGGAGGACTGGGGCTTTCAGAAGTGCAAGCCGTGCCTGGACTG
CGCCCTGCTCAGCCGCTTCCAGAAGGACACAAAGCCCTTTCACTGTGCTCCTCCGTCAGC
AAACCGCGTCCTTTGATTCGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGGCGCCGCTTCCAGCGCGCAATCAGGGCGCAGCCTGGGAACCGGAGCGCGGCGCAG
CCTGCCACTCAGCCCGGGCTGGGGGAGCCGCTGGGCCCGCCTCGGTGCCAGAAAAAGGGG
GGAAACGACGCGATCCGGGTCAAACAAAAGACTGCGAGGACCGGGCGGCGGGAGGGCGAC
TACCTGCTGAAGCCGCGTCGCCGGCGGCCGTGCACACACACATGCCCGGCCGGTCTTTGA
GGTCCTGCGACTGATCACCGCTCAGATTACGGGCATTTCAGCCCCTGCTCGTCTGCCTTT
GATCTGCAGGGTTCATGTTCTTTTCCTGGGTTGGGAGTTTCGTCTGGGCATGTGCTGACA
GATATTTGGGGGAAGGTAGAAGCATTTGGCACAGAAGTGCTGCCAAGGAGAAAGCCGGTT
GCCGAAAAGGGCGAGTCCTGGAAAGCGTTCAGCACGTTGAAGGGCTCTGCACCCAGGAAG
ACCCCGAAGAAGAGCCATGGCTTTCAAAGCGCTGCCGGAACAACAGAAAGTGTTTCTCAT
GGTTGTCGTTCTCCTAGGCTGCCTGGCGTGTACGGTGCTCTGTGAAACAGGGGACTGCGG
GCAGCAGGAGTTCAGGGATCGGTCGGGAAACTGTGCCCTCTGCCAGCAGTGCGGGCCCGG
CATGGAGCTGTCCAAGGAATGTGGCTTTGGCTACGGGGAGGATGCCCAGTGTGTGAGGTG
CCGGCCGCACAGGTTCAAGGAGGACTGGGGCTTTCAGAAGTGCAAGCCGTGCCTGGACTG
CGCCCTGCTCAGCCGCTTCCAGAAGGACACAAAGCCCTTTCACTGTGCTCCTCCGTCAGC
AAACCGCGTCCTTTGATTCGAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55661912|emb|CAH70836.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55661912|emb|CAH70836.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               328-443, + strand, RNAz p=0.527924

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               328-443, + strand, RNAz p=0.527924

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_148957, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_148957, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               213-463, gnl|bosTau2|chr12 (19296756-19296499)
               

               
               213-463, gnl|canFam2|chr25 (18061545-18061350)
               

               
               213-463, gnl|dasNov1|scaffold_471 (132296-132491)
               

               
               213-463, gnl|echTel1|scaffold_284156 (51330-51143)
               

               
               213-463, gnl|galGal2|chr1 (169540987-169540788)
               

               
               213-463, gnl|hg17|chr13 (23042750-23042948)
               

               
               213-463, gnl|Hg17|chr13 (23042775-23043020)
               

               
               213-463, gnl|loxAfr1|scaffold_53339 (5471-5275)
               

               
               213-463, gnl|mm7|chr14 (55914047-55913852)
               

               
               213-463, gnl|Mm7|chr14 (55914015-55913787)
               

               
               213-463, gnl|monDom2|scaffold_15 (32438423-32438637)
               

               
               213-463, gnl|oryCun1|scaffold_191263 (56717-56518)
               

               
               213-463, gnl|panTro1|chr14 (22228685-22228881)
               

               
               213-463, gnl|rheMac2|chr17 (3937279-3937475)
               

               
               213-463, gnl|rn3|chr15 (40155618-40155419)
               

               
               213-463, gnl|xenTro1|scaffold_417 (643076-643252)
               


               
               565-677, gnl|bosTau2|chr12 (19273278-19273166)
               

               
               565-677, gnl|Hg17|chr13 (23065483-23065595)
               

               
               565-677, gnl|Mm7|chr14 (55891953-55891841)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               213-463, gnl|bosTau2|chr12 (19296756-19296499)
               

               
               213-463, gnl|canFam2|chr25 (18061545-18061350)
               

               
               213-463, gnl|dasNov1|scaffold_471 (132296-132491)
               

               
               213-463, gnl|echTel1|scaffold_284156 (51330-51143)
               

               
               213-463, gnl|galGal2|chr1 (169540987-169540788)
               

               
               213-463, gnl|hg17|chr13 (23042750-23042948)
               

               
               213-463, gnl|Hg17|chr13 (23042775-23043020)
               

               
               213-463, gnl|loxAfr1|scaffold_53339 (5471-5275)
               

               
               213-463, gnl|mm7|chr14 (55914047-55913852)
               

               
               213-463, gnl|Mm7|chr14 (55914015-55913787)
               

               
               213-463, gnl|monDom2|scaffold_15 (32438423-32438637)
               

               
               213-463, gnl|oryCun1|scaffold_191263 (56717-56518)
               

               
               213-463, gnl|panTro1|chr14 (22228685-22228881)
               

               
               213-463, gnl|rheMac2|chr17 (3937279-3937475)
               

               
               213-463, gnl|rn3|chr15 (40155618-40155419)
               

               
               213-463, gnl|xenTro1|scaffold_417 (643076-643252)
               


               
               565-677, gnl|bosTau2|chr12 (19273278-19273166)
               

               
               565-677, gnl|Hg17|chr13 (23065483-23065595)
               

               
               565-677, gnl|Mm7|chr14 (55891953-55891841)

	213-463, gnl\|bosTau2\|chr12 (19296756-19296499)
	213-463, gnl\|canFam2\|chr25 (18061545-18061350)
	213-463, gnl\|dasNov1\|scaffold_471 (132296-132491)
	213-463, gnl\|echTel1\|scaffold_284156 (51330-51143)
	213-463, gnl\|galGal2\|chr1 (169540987-169540788)
	213-463, gnl\|hg17\|chr13 (23042750-23042948)
	213-463, gnl\|Hg17\|chr13 (23042775-23043020)
	213-463, gnl\|loxAfr1\|scaffold_53339 (5471-5275)
	213-463, gnl\|mm7\|chr14 (55914047-55913852)
	213-463, gnl\|Mm7\|chr14 (55914015-55913787)
	213-463, gnl\|monDom2\|scaffold_15 (32438423-32438637)
	213-463, gnl\|oryCun1\|scaffold_191263 (56717-56518)
	213-463, gnl\|panTro1\|chr14 (22228685-22228881)
	213-463, gnl\|rheMac2\|chr17 (3937279-3937475)
	213-463, gnl\|rn3\|chr15 (40155618-40155419)
	213-463, gnl\|xenTro1\|scaffold_417 (643076-643252)

	565-677, gnl\|bosTau2\|chr12 (19273278-19273166)
	565-677, gnl\|Hg17\|chr13 (23065483-23065595)
	565-677, gnl\|Mm7\|chr14 (55891953-55891841)