Ss1.1-Liv1-LVRM10064D10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAAGTTCAGGGGAAGACTGAAGCCAGGAGCAGGATCAGGTGGCGGCCTGAACAGCCTC GGGGACCTCTGCAACTATGGCCTCCAGCCCAGACTCGGACAATAGCTGGGTGCTTGCTGG CTCAGAGAGCTTGCCTGTGGAGACACTGGGCCCTGAATCCAGGAGGGACCCAGAGCCTGA GAGCGCCCCCCACACCCCTCAGAGCCCCTCCAAGGCAGCTGCTGAAGAATTAGCTGGGAC TTTGGATGGAGAAGAGACCCTGTTTCAGAGCGGGCGCTCCGGGTCTGGCCCGACTCTGCC AGAGGAGACGGAAGCCAAGGGAAGCCTGGAAGGTGATGCTTGTGGAATGGAGCCCCCTGG CCCAGGAGACACAGAGGCCCAGGGAGACTTGGAGGAGACCCCCATGGTGGGAGGCCTGGG ACCAGACACACAGGACCTGGAGGATCAGAGCCCCCCCAACAGCCTGCCCTCATCTGCCAA AACAGCTTGGCTCAGTGAGGAGGTCCATGGCTCCAGCAGTGAGGATGACACAGATGTGGA CGTGGAGGGTCTGCGGAGACGGCGGGGTCGGGAGCCCAGCACTCCGCAGCCCGCAGCCCG CCCGGGTGTAGAGGACCTGGCCCAGGCCCGAGGCGAGGCCGCGGGCGGGGAGCTGGGCAT CTCCCTCAACATGTGGTTCCTCGGGGCCCTGGTTCTGCTGGGTCTAGGCATCCTCCTCTT CTCCGGTGGCCTTTCAGATTCAGAAAGTGGGCCAGTGGAGGAAGCGGACCTGCAGGTCTT CCCAGATACCGGCTCAGATACCGAGATACTGGAGGCTGTGGGGGATGGGCAGGATGGGTT AAAGCAGCAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAAGTTCAGGGGAAGACTGAAGCCAGGAGCAGGATCAGGTGGCGGCCTGAACAGCCTC GGGGACCTCTGCAACTATGGCCTCCAGCCCAGACTCGGACAATAGCTGGGTGCTTGCTGG CTCAGAGAGCTTGCCTGTGGAGACACTGGGCCCTGAATCCAGGAGGGACCCAGAGCCTGA GAGCGCCCCCCACACCCCTCAGAGCCCCTCCAAGGCAGCTGCTGAAGAATTAGCTGGGAC TTTGGATGGAGAAGAGACCCTGTTTCAGAGCGGGCGCTCCGGGTCTGGCCCGACTCTGCC AGAGGAGACGGAAGCCAAGGGAAGCCTGGAAGGTGATGCTTGTGGAATGGAGCCCCCTGG CCCAGGAGACACAGAGGCCCAGGGAGACTTGGAGGAGACCCCCATGGTGGGAGGCCTGGG ACCAGACACACAGGACCTGGAGGATCAGAGCCCCCCCAACAGCCTGCCCTCATCTGCCAA AACAGCTTGGCTCAGTGAGGAGGTCCATGGCTCCAGCAGTGAGGATGACACAGATGTGGA CGTGGAGGGTCTGCGGAGACGGCGGGGTCGGGAGCCCAGCACTCCGCAGCCCGCAGCCCG CCCGGGTGTAGAGGACCTGGCCCAGGCCCGAGGCGAGGCCGCGGGCGGGGAGCTGGGCAT CTCCCTCAACATGTGGTTCCTCGGGGCCCTGGTTCTGCTGGGTCTAGGCATCCTCCTCTT CTCCGGTGGCCTTTCAGATTCAGAAAGTGGGCCAGTGGAGGAAGCGGACCTGCAGGTCTT CCCAGATACCGGCTCAGATACCGAGATACTGGAGGCTGTGGGGGATGGGCAGGATGGGTT AAAGCAGCAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 126-254, - strand, RNAz p=0.972704 | |
| 603-720, + strand, RNAz p=0.601666 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 126-254, - strand, RNAz p=0.972704 | |
| 603-720, + strand, RNAz p=0.601666 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 126-254, gnl|bosTau2|chr3 (9039267-9039139) | |
| 126-254, gnl|canFam2|chr7 (45493523-45493109) | |
| 126-254, gnl|echTel1|scaffold_297281 (5782-6197) | |
| 126-254, gnl|hg17|chr1 (151737071-151737472) | |
| 126-254, gnl|Hg17|chr1 (151737472-151737344) | |
| 126-254, gnl|mm7|chr3 (89570132-89569787) | |
| 126-254, gnl|Mm7|chr3 (89569785-89569913) | |
| 126-254, gnl|monDom2|scaffold_59 (2847706-2847313) | |
| 126-254, gnl|oryCun1|scaffold_196054 (19798-19421) | |
| 126-254, gnl|rheMac2|chr1 (133494692-133495091) | |
| 126-254, gnl|rn3|chr2 (181592137-181591802) | |
| 483-720, gnl|bosTau2|chr3 (9037132-9036901) | |
| 483-720, gnl|canFam2|chr7 (45495311-45495065) | |
| 483-720, gnl|dasNov1|scaffold_187861 (256-8) | |
| 483-720, gnl|echTel1|scaffold_297281 (3441-3687) | |
| 483-720, gnl|hg17|chr1 (151733681-151733927) | |
| 483-720, gnl|Hg17|chr1 (151733918-151733687) | |
| 483-720, gnl|loxAfr1|scaffold_67020 (21883-21637) | |
| 483-720, gnl|mm7|chr3 (89572347-89572107) | |
| 483-720, gnl|Mm7|chr3 (89572114-89572342) | |
| 483-720, gnl|monDom2|scaffold_59 (2849106-2848857) | |
| 483-720, gnl|panTro1|chr1_random (24740008-24739762) | |
| 483-720, gnl|rheMac2|chr1 (133492173-133492419) | |
| 483-720, gnl|rn3|chr2 (181594101-181593864) | |
| 483-720, gnl|xenTro1|scaffold_1426 (49474-49707) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 126-254, gnl|bosTau2|chr3 (9039267-9039139) | |
| 126-254, gnl|canFam2|chr7 (45493523-45493109) | |
| 126-254, gnl|echTel1|scaffold_297281 (5782-6197) | |
| 126-254, gnl|hg17|chr1 (151737071-151737472) | |
| 126-254, gnl|Hg17|chr1 (151737472-151737344) | |
| 126-254, gnl|mm7|chr3 (89570132-89569787) | |
| 126-254, gnl|Mm7|chr3 (89569785-89569913) | |
| 126-254, gnl|monDom2|scaffold_59 (2847706-2847313) | |
| 126-254, gnl|oryCun1|scaffold_196054 (19798-19421) | |
| 126-254, gnl|rheMac2|chr1 (133494692-133495091) | |
| 126-254, gnl|rn3|chr2 (181592137-181591802) | |
| 483-720, gnl|bosTau2|chr3 (9037132-9036901) | |
| 483-720, gnl|canFam2|chr7 (45495311-45495065) | |
| 483-720, gnl|dasNov1|scaffold_187861 (256-8) | |
| 483-720, gnl|echTel1|scaffold_297281 (3441-3687) | |
| 483-720, gnl|hg17|chr1 (151733681-151733927) | |
| 483-720, gnl|Hg17|chr1 (151733918-151733687) | |
| 483-720, gnl|loxAfr1|scaffold_67020 (21883-21637) | |
| 483-720, gnl|mm7|chr3 (89572347-89572107) | |
| 483-720, gnl|Mm7|chr3 (89572114-89572342) | |
| 483-720, gnl|monDom2|scaffold_59 (2849106-2848857) | |
| 483-720, gnl|panTro1|chr1_random (24740008-24739762) | |
| 483-720, gnl|rheMac2|chr1 (133492173-133492419) | |
| 483-720, gnl|rn3|chr2 (181594101-181593864) | |
| 483-720, gnl|xenTro1|scaffold_1426 (49474-49707) |