Non-Coding RNA Search

Ss1.1-Liv1-LVRM10070D09.5

Sequence:


               
               GAGCGGGAGCGCGGGCGGGACGCGCCCAGACCACAGCGATGGCGCCTTCGGCCCGCCGTC
GCGGCGGGGTTTTGGGCTCCCATTCGGCCACCCCGGGCCGGGGTGCGGTCGTCTTCGTGT
GGCTTTTCCTCAGCACCTTGTGCACAGCCCCTGCCAGCGCCATCCAGGTCACGGTGTCCA
ACCCCTACCACGTGGTGATCCTCTTCCAACCCGTGACCCTGCCCTGCACCTACCAGTCGA
CCACGACCCCCACGGCACCCATCGTGATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCA
TCGCCGATGCCTTCTCCCCTGCCAGTGTCGACAACCAGCTCAATGCCCAGCTGGCGGCTG
GTAACCCGGGCTACAACCCCTACGTGGAATGCCAGGACAGTGTGCGCACCGTCAGGGTTG
TGGCCACCAAGCAGGGCAATGCTGTGACCTTGGGAGACTACTACCAGGGCCGGAGGATCA
CCATCACGGGAAATGCCGACCTGACCTTTGACCAGACGGCTTGGGGGGACAGTGGTGTGT
ACTACTGCTCCGTGGTCTCGGCCCAGGACCTCCAGGGGAACAACGAGGCCTACGCAGAGC
TCATCGTCCTGGACTGGCTGTTTGTGGTCGTGGTCTGCCTGGCGGTCTTCCTCGTCTTCC
TCCTGCTGGGCATCTGCTGGTGTCAGTGCTGCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGGAGCGCGGGCGGGACGCGCCCAGACCACAGCGATGGCGCCTTCGGCCCGCCGTC
GCGGCGGGGTTTTGGGCTCCCATTCGGCCACCCCGGGCCGGGGTGCGGTCGTCTTCGTGT
GGCTTTTCCTCAGCACCTTGTGCACAGCCCCTGCCAGCGCCATCCAGGTCACGGTGTCCA
ACCCCTACCACGTGGTGATCCTCTTCCAACCCGTGACCCTGCCCTGCACCTACCAGTCGA
CCACGACCCCCACGGCACCCATCGTGATCTGGAAGTACAAGTCTTTCTGCCGGGACCGCA
TCGCCGATGCCTTCTCCCCTGCCAGTGTCGACAACCAGCTCAATGCCCAGCTGGCGGCTG
GTAACCCGGGCTACAACCCCTACGTGGAATGCCAGGACAGTGTGCGCACCGTCAGGGTTG
TGGCCACCAAGCAGGGCAATGCTGTGACCTTGGGAGACTACTACCAGGGCCGGAGGATCA
CCATCACGGGAAATGCCGACCTGACCTTTGACCAGACGGCTTGGGGGGACAGTGGTGTGT
ACTACTGCTCCGTGGTCTCGGCCCAGGACCTCCAGGGGAACAACGAGGCCTACGCAGAGC
TCATCGTCCTGGACTGGCTGTTTGTGGTCGTGGTCTGCCTGGCGGTCTTCCTCGTCTTCC
TCCTGCTGGGCATCTGCTGGTGTCAGTGCTGCCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61812382|ref|XP_606118.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61812382|ref|XP_606118.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               336-492, - strand, RNAz p=0.88401

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               336-492, - strand, RNAz p=0.88401

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               137-492, gnl|bosTau2|chr18 (39806468-39806113)
               

               
               137-492, gnl|Hg17|chr19 (40433047-40433402)
               

               
               137-492, gnl|Mm7|chr7 (27912003-27911648)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-492, gnl|bosTau2|chr18 (39806468-39806113)
               

               
               137-492, gnl|Hg17|chr19 (40433047-40433402)
               

               
               137-492, gnl|Mm7|chr7 (27912003-27911648)

	137-492, gnl\|bosTau2\|chr18 (39806468-39806113)
	137-492, gnl\|Hg17\|chr19 (40433047-40433402)
	137-492, gnl\|Mm7\|chr7 (27912003-27911648)