Ss1.1-Liv1-LVRM10078E05.5
|
ATTTTTGTGCTGGGGTTGGGCGTTCTCTGGTCCATTAAATTTAGGAAATGCCTCCTACTT
TATTCTCTCTTAAAGACTTACAAGGCACACACGCTTATCAGTACTTTGAGAAGTCCATGG
TTAAGAAACCTGTTGAACAGTGTTTAATGAAGCATTTCTCAAATATAGGTGAATATACAA
TTTAAGGCATTTTTTATTAATTTCGTGGACTGCCAGTCGTTTTTCGGGGAAGACTTCTGA
GGAGCATCATTTGGGAAAGGCTTCTGCTCCATCTTTGGGAGGTGACTGAGTCATTACGTA
AGGAAACTCCTCATTCTTCCTGTGCTGGCTGGGACACACCCTCTGGGTGGCACACCCCTC
GCCGCGTCCAACCCAGCCCACAGACTCGTGGGAAGAAAGCCAGAGCCCAAGCCTTTCCTC
CGAGGAGTGGATGCAGCCCTTCCTAGTGCCAGCCACCCCTGGAAGAGAAGCTGAAACCTT
CGAGCTTTGTGCCCCTTCACGACCTGGGAACCTGCTGAGCTCATGGACACGCATCACATC
CCCAAAGACAACCAAGTGGCTCATCCCCAGGACCCGCACCACCCGCCAGAGAAGCCTGTC
ATTCACTGCCACAAATGTGGGGAGCCATGCAAGGGCGAAGTGCTTCGGGTCCAGACCAAA
CATTTCCACATCANATGTTTCACC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTTTTGTGCTGGGGTTGGGCGTTCTCTGGTCCATTAAATTTAGGAAATGCCTCCTACTT
TATTCTCTCTTAAAGACTTACAAGGCACACACGCTTATCAGTACTTTGAGAAGTCCATGG
TTAAGAAACCTGTTGAACAGTGTTTAATGAAGCATTTCTCAAATATAGGTGAATATACAA
TTTAAGGCATTTTTTATTAATTTCGTGGACTGCCAGTCGTTTTTCGGGGAAGACTTCTGA
GGAGCATCATTTGGGAAAGGCTTCTGCTCCATCTTTGGGAGGTGACTGAGTCATTACGTA
AGGAAACTCCTCATTCTTCCTGTGCTGGCTGGGACACACCCTCTGGGTGGCACACCCCTC
GCCGCGTCCAACCCAGCCCACAGACTCGTGGGAAGAAAGCCAGAGCCCAAGCCTTTCCTC
CGAGGAGTGGATGCAGCCCTTCCTAGTGCCAGCCACCCCTGGAAGAGAAGCTGAAACCTT
CGAGCTTTGTGCCCCTTCACGACCTGGGAACCTGCTGAGCTCATGGACACGCATCACATC
CCCAAAGACAACCAAGTGGCTCATCCCCAGGACCCGCACCACCCGCCAGAGAAGCCTGTC
ATTCACTGCCACAAATGTGGGGAGCCATGCAAGGGCGAAGTGCTTCGGGTCCAGACCAAA
CATTTCCACATCANATGTTTCACC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
375-515, - strand, RNAmicro p=0.986064 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
375-515, - strand, RNAmicro p=0.986064 |
Human gene identifier and UTR site,
human gene reading direction
|
301-556, gnl|bosTau2|chr26 (22254941-22254691) |
|
301-556, gnl|canFam2|chr28 (28464300-28464783) |
|
301-556, gnl|dasNov1|scaffold_39038 (789-1268) |
|
301-556, gnl|echTel1|scaffold_324515 (44848-45304) |
|
301-556, gnl|hg17|chr10 (116434019-116434497) |
|
301-556, gnl|Hg17|chr10 (116434293-116434039) |
|
301-556, gnl|loxAfr1|scaffold_30683 (17975-17488) |
|
301-556, gnl|mm7|chr19 (57155239-57155683) |
|
301-556, gnl|Mm7|chr19 (57155490-57155258) |
|
301-556, gnl|monDom2|scaffold_14 (47208723-47208216) |
|
301-556, gnl|oryCun1|scaffold_211643 (63189-62719) |
|
301-556, gnl|panTro1|chr8 (118598912-118599390) |
|
301-556, gnl|rheMac2|chr9 (114331358-114331836) |
|
301-556, gnl|rn3|chr1 (263819651-263820070) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
301-556, gnl|bosTau2|chr26 (22254941-22254691) |
|
301-556, gnl|canFam2|chr28 (28464300-28464783) |
|
301-556, gnl|dasNov1|scaffold_39038 (789-1268) |
|
301-556, gnl|echTel1|scaffold_324515 (44848-45304) |
|
301-556, gnl|hg17|chr10 (116434019-116434497) |
|
301-556, gnl|Hg17|chr10 (116434293-116434039) |
|
301-556, gnl|loxAfr1|scaffold_30683 (17975-17488) |
|
301-556, gnl|mm7|chr19 (57155239-57155683) |
|
301-556, gnl|Mm7|chr19 (57155490-57155258) |
|
301-556, gnl|monDom2|scaffold_14 (47208723-47208216) |
|
301-556, gnl|oryCun1|scaffold_211643 (63189-62719) |
|
301-556, gnl|panTro1|chr8 (118598912-118599390) |
|
301-556, gnl|rheMac2|chr9 (114331358-114331836) |
|
301-556, gnl|rn3|chr1 (263819651-263820070) |
