Non-Coding RNA Search

Ss1.1-Liv1-LVRM10102C12.5

Sequence:


               
               CGGCTCCGTCTGCTGGCCGGCTGGGCGGCGCGGCGCCCGGGGCACGGCAAATGGGTGCCG
AGGCCTCCGGGAGCGGGTTGGCTCTGCGGGAGCTGATGCGCGAGGCAGAGATCAGCCTGC
TCGAGTGCAAAGTGTGCTTTGAGCGGTTTGGCCACCGCCAGCAGCGGCGCCCGCGCAACC
TGCCCTGCGGCCACGTGGTCTGCCTGGCCTGCGTGGCTGCTCTGGCGCATCCGCGGACGC
TGGCCCTCGAGTGCCCCTTCTGCCGGCGAGCCTGCCGGGGCTGCGACACCAGCGACTGCC
TGCCCGTGCTGCACCTCCTGGAGCTCCTGGGCTCCGCGCTTCGCCCGGCGCCCGCGGCCT
CCCGCGGCGCCCCCTCCTCCCCAGGGACCCTCACCTGCCACTACGCCTTCGGCGGCTGGG
GGACCTTGGTCAACCCCACAGGACTGGCGCTGTGTCCCAAGACAGGACGGGTCGTGGTGG
TGCACGACGGCAAGAGGCGGGTCAAGATCTTTGACTCCGCGGGAGGATGTGTCCATCAAT
TTGGAGAGAAGGGGGACGCTGCTCAGGACATTAGGTACCCACTTGACGTCACTGTCACCA
ACGACTGCCATGTGGTTATCACCGACGCCGGCGACCGCTCCATCAAAGTGTTTGACTTTT
TTGGCCAGATCAAGCTTGTTATTGGAGGCCAGTTCTCCTTGCCTTNAGGTGTGGAGACCA
CCCCTCAGAATGGGGTCTTGGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTCCGTCTGCTGGCCGGCTGGGCGGCGCGGCGCCCGGGGCACGGCAAATGGGTGCCG
AGGCCTCCGGGAGCGGGTTGGCTCTGCGGGAGCTGATGCGCGAGGCAGAGATCAGCCTGC
TCGAGTGCAAAGTGTGCTTTGAGCGGTTTGGCCACCGCCAGCAGCGGCGCCCGCGCAACC
TGCCCTGCGGCCACGTGGTCTGCCTGGCCTGCGTGGCTGCTCTGGCGCATCCGCGGACGC
TGGCCCTCGAGTGCCCCTTCTGCCGGCGAGCCTGCCGGGGCTGCGACACCAGCGACTGCC
TGCCCGTGCTGCACCTCCTGGAGCTCCTGGGCTCCGCGCTTCGCCCGGCGCCCGCGGCCT
CCCGCGGCGCCCCCTCCTCCCCAGGGACCCTCACCTGCCACTACGCCTTCGGCGGCTGGG
GGACCTTGGTCAACCCCACAGGACTGGCGCTGTGTCCCAAGACAGGACGGGTCGTGGTGG
TGCACGACGGCAAGAGGCGGGTCAAGATCTTTGACTCCGCGGGAGGATGTGTCCATCAAT
TTGGAGAGAAGGGGGACGCTGCTCAGGACATTAGGTACCCACTTGACGTCACTGTCACCA
ACGACTGCCATGTGGTTATCACCGACGCCGGCGACCGCTCCATCAAAGTGTTTGACTTTT
TTGGCCAGATCAAGCTTGTTATTGGAGGCCAGTTCTCCTTGCCTTNAGGTGTGGAGACCA
CCCCTCAGAATGGGGTCTTGGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33469244|gb|AAQ19671.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33469244|gb|AAQ19671.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               576-742, - strand, RNAz p=0.842209

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               576-742, - strand, RNAz p=0.842209

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               18-742, gnl|bosTau2|chr23 (29797196-29797918)
               

               
               18-742, gnl|Hg17|chr6 (18230840-18230125)
               

               
               18-742, gnl|Mm7|chr13 (46496889-46496181)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-742, gnl|bosTau2|chr23 (29797196-29797918)
               

               
               18-742, gnl|Hg17|chr6 (18230840-18230125)
               

               
               18-742, gnl|Mm7|chr13 (46496889-46496181)

	18-742, gnl\|bosTau2\|chr23 (29797196-29797918)
	18-742, gnl\|Hg17\|chr6 (18230840-18230125)
	18-742, gnl\|Mm7\|chr13 (46496889-46496181)