Non-Coding RNA Search

Ss1.1-Liv1-LVRM10113H10.5

Sequence:


               
               AGGTGGGTTGCGGGAGACGTGGGGCGGGCTCTCTGCCCTCCCGCAGCGCTTAGCGTCCCG
CGCAGGCTGGAGTTGGCGGCGCTGGAGCGCGTGGTGCGGATCTCCGCCAAGCCCACCAAG
CGGCTGCAGGACGCGCTGCAGCCCATCCTGGCGAAGCATGGCCTCAGCCCGCAACAGGTG
GCGCTGCGCCTGCCAGGTGAGAAGCAGCCGCTGGATCTAGGGAAGCTGGTGAGCTCCGTG
GCGGCCCAGAGACTGGTGTTGGACACTCTCCCAGGTGTGAAGATCCCTGAAGCTGGCGAC
GTACCCCCCTGCCGCAGCCAGGATCCAGGACAAAGCCACCCACCCCCCTTCACAGTCCCT
GAACTCACTGGCCCAGACATCCAGTAGTATCGCTGGGAAGCGGCAGACCTGTGACATTGA
AGGCCTGGTGGAGCTGTTGAACCGGGTGCAGAGCAGCGGAGCCCATGATCAGAGGGGCCT
TCTGCGCAAAGAGGACCTGGTGCTTCCAGAATTTCTGCAGCTGCCTGTCCAAGGAAATAA
CTCCCAGGAGGCCCCAGCACAGACTGAATCAGCGGCCCAGCCTAAGGGGGCCCCCTCAGA
CTCCACTGCCCACTCAGCCCTCTGACAGCTGCCCAGAAGTCCAAGCCAGCTGCATGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGGTTGCGGGAGACGTGGGGCGGGCTCTCTGCCCTCCCGCAGCGCTTAGCGTCCCG
CGCAGGCTGGAGTTGGCGGCGCTGGAGCGCGTGGTGCGGATCTCCGCCAAGCCCACCAAG
CGGCTGCAGGACGCGCTGCAGCCCATCCTGGCGAAGCATGGCCTCAGCCCGCAACAGGTG
GCGCTGCGCCTGCCAGGTGAGAAGCAGCCGCTGGATCTAGGGAAGCTGGTGAGCTCCGTG
GCGGCCCAGAGACTGGTGTTGGACACTCTCCCAGGTGTGAAGATCCCTGAAGCTGGCGAC
GTACCCCCCTGCCGCAGCCAGGATCCAGGACAAAGCCACCCACCCCCCTTCACAGTCCCT
GAACTCACTGGCCCAGACATCCAGTAGTATCGCTGGGAAGCGGCAGACCTGTGACATTGA
AGGCCTGGTGGAGCTGTTGAACCGGGTGCAGAGCAGCGGAGCCCATGATCAGAGGGGCCT
TCTGCGCAAAGAGGACCTGGTGCTTCCAGAATTTCTGCAGCTGCCTGTCCAAGGAAATAA
CTCCCAGGAGGCCCCAGCACAGACTGAATCAGCGGCCCAGCCTAAGGGGGCCCCCTCAGA
CTCCACTGCCCACTCAGCCCTCTGACAGCTGCCCAGAAGTCCAAGCCAGCTGCATGGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21465865|pdb|1KJY|D

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21465865|pdb|1KJY|D

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               73-192, - strand, RNAz p=0.559143
               

               
               540-660, - strand, RNAz p=0.987995

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-192, - strand, RNAz p=0.559143
               

               
               540-660, - strand, RNAz p=0.987995

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-192, gnl|bosTau2|chr7 (21595818-21596007)
               

               
               2-192, gnl|Hg17|chr5 (176730453-176730638)
               

               
               2-192, gnl|Mm7|chr13 (54463690-54463871)
               


               
               421-660, gnl|bosTau2|chr7 (21596791-21597030)
               

               
               421-660, gnl|Hg17|chr5 (176731478-176731717)
               

               
               421-660, gnl|Mm7|chr13 (54464621-54464860)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-192, gnl|bosTau2|chr7 (21595818-21596007)
               

               
               2-192, gnl|Hg17|chr5 (176730453-176730638)
               

               
               2-192, gnl|Mm7|chr13 (54463690-54463871)
               


               
               421-660, gnl|bosTau2|chr7 (21596791-21597030)
               

               
               421-660, gnl|Hg17|chr5 (176731478-176731717)
               

               
               421-660, gnl|Mm7|chr13 (54464621-54464860)

	73-192, - strand, RNAz p=0.559143
	540-660, - strand, RNAz p=0.987995

	2-192, gnl\|bosTau2\|chr7 (21595818-21596007)
	2-192, gnl\|Hg17\|chr5 (176730453-176730638)
	2-192, gnl\|Mm7\|chr13 (54463690-54463871)

	421-660, gnl\|bosTau2\|chr7 (21596791-21597030)
	421-660, gnl\|Hg17\|chr5 (176731478-176731717)
	421-660, gnl\|Mm7\|chr13 (54464621-54464860)