Non-Coding RNA Search

Ss1.1-Liv1-LVRM10117A08.5

Sequence:


               
               AACAAGATGGTGTTTTCTATTTTTGGATTTCTTCTTATTTTCCCCCTTTTTGGTAGTGGG
GGTTTAGGGGAAGCATAATGTTTGTATAAAGAACTGTCACCCCAGAGTGACATTTATTTT
CCAAGGTGACAGTGAACTCACTGTTGGTTTCCTATGGTGTCTGTGTGCTGTGCCTAGACA
AGGTCTGAGGCTCTGAGGAAAATCAAGATTTTCTTTAATTTGGTTTCCATGTGCATCCTT
TAATGTCAGTTACTTTGCTCACCTGGAGTAAAATTAAAGGGAGACCCTTTGAAGTGTGCT
CGACGCCTGCCAGGGGTTCCCAGCCAAGTTCTAGTTCACTTGTTCAGACAGACGAGAGGC
TTCCGTGGAGTAGGCTGCCTGCGGCCCATCTGCTTGGCGGCACCTCCCCACTGGCCCTTA
ACCTCTCAGTCTGGTCTGCGGCTGGGCAAGACGGGGTCCCCTCAGCGATCATCCGCCCCC
ACCACACACAGGCAGAGGGAGCGGCTCGCTTCTCGCGCCCGACTCCTCTGACCTGGGATC
GGCGCAGCTCAGGGCGGCCGTGTTATTGGTCCTTAACTCCTGCTGTCCTCTTGACATCTG
ACCACCAGCAAAAGCAAGGATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAGATGGTGTTTTCTATTTTTGGATTTCTTCTTATTTTCCCCCTTTTTGGTAGTGGG
GGTTTAGGGGAAGCATAATGTTTGTATAAAGAACTGTCACCCCAGAGTGACATTTATTTT
CCAAGGTGACAGTGAACTCACTGTTGGTTTCCTATGGTGTCTGTGTGCTGTGCCTAGACA
AGGTCTGAGGCTCTGAGGAAAATCAAGATTTTCTTTAATTTGGTTTCCATGTGCATCCTT
TAATGTCAGTTACTTTGCTCACCTGGAGTAAAATTAAAGGGAGACCCTTTGAAGTGTGCT
CGACGCCTGCCAGGGGTTCCCAGCCAAGTTCTAGTTCACTTGTTCAGACAGACGAGAGGC
TTCCGTGGAGTAGGCTGCCTGCGGCCCATCTGCTTGGCGGCACCTCCCCACTGGCCCTTA
ACCTCTCAGTCTGGTCTGCGGCTGGGCAAGACGGGGTCCCCTCAGCGATCATCCGCCCCC
ACCACACACAGGCAGAGGGAGCGGCTCGCTTCTCGCGCCCGACTCCTCTGACCTGGGATC
GGCGCAGCTCAGGGCGGCCGTGTTATTGGTCCTTAACTCCTGCTGTCCTCTTGACATCTG
ACCACCAGCAAAAGCAAGGATCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-152, - strand, RNAz p=0.97272

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-152, - strand, RNAz p=0.97272

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-273, gnl|bosTau2|chr21 (44947407-44947698)
               

               
               1-273, gnl|Hg17|chr14 (99816485-99816756)
               

               
               1-273, gnl|Mm7|chr12 (106339454-106339709)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-273, gnl|bosTau2|chr21 (44947407-44947698)
               

               
               1-273, gnl|Hg17|chr14 (99816485-99816756)
               

               
               1-273, gnl|Mm7|chr12 (106339454-106339709)

	1-273, gnl\|bosTau2\|chr21 (44947407-44947698)
	1-273, gnl\|Hg17\|chr14 (99816485-99816756)
	1-273, gnl\|Mm7\|chr12 (106339454-106339709)