Non-Coding RNA Search

Ss1.1-Liv1-LVRM10118D10.5

Sequence:


               
               CTGGGCAGCGTGGCTGGTGCTTTTGGAACAGCCTGGAGGTGCTCTTTCTCACCCCTCTTC
CATTTGGGTTTTCATTAAAACACAAGAGGACCAGAGTTCTCCTTGTGGCTCAAACCCAAC
TAGTATCCATCCATGAGGATGCAGGTTTGATCCCTGGCCCCACTCGGTGGCTTAAGGATC
CGGTGTTGCCGTGAGCTGTGGTGTAGGTTGCATTCGAGGCTCAGTCCTCCTTGGCTGTGG
CTGTGGCTGTGGTGTAGGCCAGCAGCTGAAGCTCTGATTTGGACCCCTAGCCTGGGAGCC
TCCATATGCCACAGATGCAGCCTGCAAAGAAAAATAAAAATTAAAAAAAAAAGATCTACA
AGGGGGCCAACACCTTGGCTTCTCAATTTAGCATTTAAGGCCTTTGACAGTCTGCCCACT
TCATCCTTCTCCCCTGCCTGCTGCTCCAGCCACAGTGGACTCCTGGGATCTGCATGCACC
CGGTTCCCTCGGGCCTGGATCACCCTTGTGAAATCCTGTCCTGCTGCTGCGAGCTGTCCC
AACACTGGGTACCTTGCATGTGGCACCTATGTCATGCCCCCTCATCATTTCCCGCTATCG
TTATTTAACTCCTATGGTCTTTAGCCTTTCACCTTGTCACCTGCCTCTCCATCGAAAAGG
TAAGCTCCTTTTGGATGGCGTCTTTGGCGTGTTTTTTTAGGCTTCACAGCACCTAGCAAG
AGACGGACTTGACACACCTTTACCAATGGGTGACGGATCTCTGTCTGCCCCGATCACCCC
GAGTTCACAGTAAGCTGCCCCCGGCAGCAGGCACACCCTCACCCCTAGTAATGGAGGCCC
TCGTCTCTTCTTGTTCCTCCACAGTGTGGGGCTTTGGTTTCCTCAGTGTCTCACTGATTA
ACCTGGCCTCTCTCCTGGGAGTCCTCGTCCTGCCGTGCACAGAGAAAGCATTTTTCAGCC
GTGTGCTCACTTACTTCATCGCCCTGTCCATTGGAACGCTGCTCTCTAATGCGCTCTTCC
AGCTCATCCCAGAGGTGCAGTAGTATAGAACCCTGCGCGTCCTCTCTCCCCGGGGCGCCC
CCGCCCCCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGCAGCGTGGCTGGTGCTTTTGGAACAGCCTGGAGGTGCTCTTTCTCACCCCTCTTC
CATTTGGGTTTTCATTAAAACACAAGAGGACCAGAGTTCTCCTTGTGGCTCAAACCCAAC
TAGTATCCATCCATGAGGATGCAGGTTTGATCCCTGGCCCCACTCGGTGGCTTAAGGATC
CGGTGTTGCCGTGAGCTGTGGTGTAGGTTGCATTCGAGGCTCAGTCCTCCTTGGCTGTGG
CTGTGGCTGTGGTGTAGGCCAGCAGCTGAAGCTCTGATTTGGACCCCTAGCCTGGGAGCC
TCCATATGCCACAGATGCAGCCTGCAAAGAAAAATAAAAATTAAAAAAAAAAGATCTACA
AGGGGGCCAACACCTTGGCTTCTCAATTTAGCATTTAAGGCCTTTGACAGTCTGCCCACT
TCATCCTTCTCCCCTGCCTGCTGCTCCAGCCACAGTGGACTCCTGGGATCTGCATGCACC
CGGTTCCCTCGGGCCTGGATCACCCTTGTGAAATCCTGTCCTGCTGCTGCGAGCTGTCCC
AACACTGGGTACCTTGCATGTGGCACCTATGTCATGCCCCCTCATCATTTCCCGCTATCG
TTATTTAACTCCTATGGTCTTTAGCCTTTCACCTTGTCACCTGCCTCTCCATCGAAAAGG
TAAGCTCCTTTTGGATGGCGTCTTTGGCGTGTTTTTTTAGGCTTCACAGCACCTAGCAAG
AGACGGACTTGACACACCTTTACCAATGGGTGACGGATCTCTGTCTGCCCCGATCACCCC
GAGTTCACAGTAAGCTGCCCCCGGCAGCAGGCACACCCTCACCCCTAGTAATGGAGGCCC
TCGTCTCTTCTTGTTCCTCCACAGTGTGGGGCTTTGGTTTCCTCAGTGTCTCACTGATTA
ACCTGGCCTCTCTCCTGGGAGTCCTCGTCCTGCCGTGCACAGAGAAAGCATTTTTCAGCC
GTGTGCTCACTTACTTCATCGCCCTGTCCATTGGAACGCTGCTCTCTAATGCGCTCTTCC
AGCTCATCCCAGAGGTGCAGTAGTATAGAACCCTGCGCGTCCTCTCTCCCCGGGGCGCCC
CCGCCCCCCACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               771-919, - strand, RNAz p=0.732912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               771-919, - strand, RNAz p=0.732912

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               746-886, - strand, RNAmicro p=0.999639

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               746-886, - strand, RNAmicro p=0.999639

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               356-1087, gnl|bosTau2|chr8 (31152261-31151522)
               

               
               356-1087, gnl|Mm7|chr14 (64960748-64960099)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-1087, gnl|bosTau2|chr8 (31152261-31151522)
               

               
               356-1087, gnl|Mm7|chr14 (64960748-64960099)

	356-1087, gnl\|bosTau2\|chr8 (31152261-31151522)
	356-1087, gnl\|Mm7\|chr14 (64960748-64960099)