Ss1.1-Liv1-LVRM10118G12.5
|
AGTGCCAAAGCCCTGGGCAGCCCGCGTGGGTGACTCTCTGGGTAGGTGGCCCGCACCTGC
ACAGGTGGGCCTCAGACTCCCAGGCTGCAGCCCAGCCCTGCGCCTCTGCAGACAGGAGTG
TCTCCACCTCCCCAGAACCAACCTCTTGGCCCCTCAGAGAGATGGCAACGGAGGCCACAA
GGAACTGGGCCTGGACAGCCTTGAATCTGGCGGAGCAGATCCTGGCGGAGTTCCAGCTGC
AGGAGGAGGACCTGAAAAAGGTGATGAGGCGGATGCAGAAGGAGATGGACCGAGGCCTGA
GGCTGGAGACCCACGAAGAGGCCAGTGTGAAGATGCTGCCCACCTACGTACGCTCCACCC
CAGAAGGCTCAGAGGTTGGGGACTTCCTCTCCCTGGACCTGGGCGGCACCAACTTCAGGG
TGATGCTGGTGAAGGTGGGGGAAGGCGAGGAGGGGCAGTGGAGTGTGAAGACCAAGCACC
AGATGTACTCCATCCCCGAGGACGCCATGACCGGCACTGCTGAGATGCTCTTTGACTACA
TCTCCGAGTGCATCTCCGACTTCCTGGACAAGCATCAGATGAAGCACAAAAAGCTGCCCT
TGGGCTTCACCTTCTCCTTTCCCG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTGCCAAAGCCCTGGGCAGCCCGCGTGGGTGACTCTCTGGGTAGGTGGCCCGCACCTGC
ACAGGTGGGCCTCAGACTCCCAGGCTGCAGCCCAGCCCTGCGCCTCTGCAGACAGGAGTG
TCTCCACCTCCCCAGAACCAACCTCTTGGCCCCTCAGAGAGATGGCAACGGAGGCCACAA
GGAACTGGGCCTGGACAGCCTTGAATCTGGCGGAGCAGATCCTGGCGGAGTTCCAGCTGC
AGGAGGAGGACCTGAAAAAGGTGATGAGGCGGATGCAGAAGGAGATGGACCGAGGCCTGA
GGCTGGAGACCCACGAAGAGGCCAGTGTGAAGATGCTGCCCACCTACGTACGCTCCACCC
CAGAAGGCTCAGAGGTTGGGGACTTCCTCTCCCTGGACCTGGGCGGCACCAACTTCAGGG
TGATGCTGGTGAAGGTGGGGGAAGGCGAGGAGGGGCAGTGGAGTGTGAAGACCAAGCACC
AGATGTACTCCATCCCCGAGGACGCCATGACCGGCACTGCTGAGATGCTCTTTGACTACA
TCTCCGAGTGCATCTCCGACTTCCTGGACAAGCATCAGATGAAGCACAAAAAGCTGCCCT
TGGGCTTCACCTTCTCCTTTCCCG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
209-372, gnl|bosTau2|chr4 (39102622-39102459) |
|
209-372, gnl|canFam2|chrUn (33629639-33629459) |
|
209-372, gnl|danRer3|chr14 (50585132-50584964) |
|
209-372, gnl|dasNov1|scaffold_10321 (8926-9118) |
|
209-372, gnl|echTel1|scaffold_180249 (10311-10479) |
|
209-372, gnl|fr1|chrUn (1326865-1327044) |
|
209-372, gnl|galGal2|chrUn (83038756-83038939) |
|
209-372, gnl|hg17|chr7 (43966138-43966324) |
|
209-372, gnl|Hg17|chr7 (43966303-43966140) |
|
209-372, gnl|loxAfr1|scaffold_112044 (4258-4426) |
|
209-372, gnl|mm7|chr11 (5862863-5863043) |
|
209-372, gnl|Mm7|chr11 (5863028-5862865) |
|
209-372, gnl|monDom2|scaffold_1 (155988176-155987990) |
|
209-372, gnl|oryCun1|scaffold_78330 (588-410) |
|
209-372, gnl|panTro1|chr6_random (30986579-30986393) |
|
209-372, gnl|rheMac2|chr3 (82182135-82181949) |
|
209-372, gnl|rn3|chr14 (86601911-86602091) |
|
209-372, gnl|tetNig1|chr12 (5900508-5900683) |
|
209-372, gnl|xenTro1|scaffold_217 (1396046-1395853) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
209-372, gnl|bosTau2|chr4 (39102622-39102459) |
|
209-372, gnl|canFam2|chrUn (33629639-33629459) |
|
209-372, gnl|danRer3|chr14 (50585132-50584964) |
|
209-372, gnl|dasNov1|scaffold_10321 (8926-9118) |
|
209-372, gnl|echTel1|scaffold_180249 (10311-10479) |
|
209-372, gnl|fr1|chrUn (1326865-1327044) |
|
209-372, gnl|galGal2|chrUn (83038756-83038939) |
|
209-372, gnl|hg17|chr7 (43966138-43966324) |
|
209-372, gnl|Hg17|chr7 (43966303-43966140) |
|
209-372, gnl|loxAfr1|scaffold_112044 (4258-4426) |
|
209-372, gnl|mm7|chr11 (5862863-5863043) |
|
209-372, gnl|Mm7|chr11 (5863028-5862865) |
|
209-372, gnl|monDom2|scaffold_1 (155988176-155987990) |
|
209-372, gnl|oryCun1|scaffold_78330 (588-410) |
|
209-372, gnl|panTro1|chr6_random (30986579-30986393) |
|
209-372, gnl|rheMac2|chr3 (82182135-82181949) |
|
209-372, gnl|rn3|chr14 (86601911-86602091) |
|
209-372, gnl|tetNig1|chr12 (5900508-5900683) |
|
209-372, gnl|xenTro1|scaffold_217 (1396046-1395853) |
