Ss1.1-Liv1-LVRM10119A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTTTTCTGCCCTGGCCGCCAGGTCCACAGCACCCAGCACAGGGCCAGGCAGATTCTG GCCTCTTTGGAAGAATAGATTAATCTTTCCTCAGTCCCCGCTGAACACTTTCTCCGCTTC AGCTGCTGCAGATGCTGTTTGAGGAAGCTCTTCCGCTCAGGGGCTCTGATGCTGTGCTTA GTACTCTCAGCCTGGTGCAGGACCTGCTCTCTGCTCACTGTCACTATGTCTTGCCCAGCT CCTGACCCTCCTGAGGGGCCTGGGACTCAGGGCATGTGGCGAGGTGCCTTGCGGATCCTG CAGCTCCCGGGATCCCTAGACTGTCCCCTGCTGCAGGTGCTCGCAGGTACCGCTGTTGGT GAGAAGATGGAGGGCTCCCTGCCCTGGATTGTCCTATGGCTCCTGGAAGGAAACAACTAC AGCAGTCTTCTTCTTCGCCTGGACCCTCAAGGTGGCAACCTGAGCTTGCTCCAGGCTGCT CTCTTGGGGGCGGCAGGAAGGAGGATGCAGGTGAAACAGGTGAGGCCCACCCTGTGGGAT GCAGGAGAAGAGGCCCGGGCCCGCCGCGCTGCCCTCAAGAGCTTGCGTTCGGGTCTCCTT GGGGACACCCTGACAGAAGGTGGGCTCAGCCAGCTGGGCAGAGCTCTGCGGGAGTTGCGG GTGGTAAAAGCCTGGANCCGGTGCTCAGGAAGCCGGATGCTCAACGTGGTTGAAGCTGAG GCTGCAGGGCTCCCAGAACCCCAGGTGACAGATTCAACAGCAAGCGTCNGCCCAGGCCTC CAGCGGGGAGCTGGGTCTTTCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTTTTCTGCCCTGGCCGCCAGGTCCACAGCACCCAGCACAGGGCCAGGCAGATTCTG GCCTCTTTGGAAGAATAGATTAATCTTTCCTCAGTCCCCGCTGAACACTTTCTCCGCTTC AGCTGCTGCAGATGCTGTTTGAGGAAGCTCTTCCGCTCAGGGGCTCTGATGCTGTGCTTA GTACTCTCAGCCTGGTGCAGGACCTGCTCTCTGCTCACTGTCACTATGTCTTGCCCAGCT CCTGACCCTCCTGAGGGGCCTGGGACTCAGGGCATGTGGCGAGGTGCCTTGCGGATCCTG CAGCTCCCGGGATCCCTAGACTGTCCCCTGCTGCAGGTGCTCGCAGGTACCGCTGTTGGT GAGAAGATGGAGGGCTCCCTGCCCTGGATTGTCCTATGGCTCCTGGAAGGAAACAACTAC AGCAGTCTTCTTCTTCGCCTGGACCCTCAAGGTGGCAACCTGAGCTTGCTCCAGGCTGCT CTCTTGGGGGCGGCAGGAAGGAGGATGCAGGTGAAACAGGTGAGGCCCACCCTGTGGGAT GCAGGAGAAGAGGCCCGGGCCCGCCGCGCTGCCCTCAAGAGCTTGCGTTCGGGTCTCCTT GGGGACACCCTGACAGAAGGTGGGCTCAGCCAGCTGGGCAGAGCTCTGCGGGAGTTGCGG GTGGTAAAAGCCTGGANCCGGTGCTCAGGAAGCCGGATGCTCAACGTGGTTGAAGCTGAG GCTGCAGGGCTCCCAGAACCCCAGGTGACAGATTCAACAGCAAGCGTCNGCCCAGGCCTC CAGCGGGGAGCTGGGTCTTTCCTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 6-95, - strand, RNAz p=0.525998 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 6-95, - strand, RNAz p=0.525998 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 6-201, gnl|bosTau2|chr7 (30551984-30552188) | |
| 6-201, gnl|canFam2|chr2 (38623930-38624241) | |
| 6-201, gnl|echTel1|scaffold_126360 (1366-1060) | |
| 6-201, gnl|hg17|chr5 (139951697-139952008) | |
| 6-201, gnl|Hg17|chr5 (139951990-139951792) | |
| 6-201, gnl|mm7|chr18 (37070803-37071113) | |
| 6-201, gnl|Mm7|chr18 (37071088-37070884) | |
| 6-201, gnl|oryCun1|scaffold_206493 (14834-14575) | |
| 6-201, gnl|panTro1|chr4 (146569654-146569965) | |
| 6-201, gnl|rheMac2|chr6 (137006887-137007199) | |
| 6-201, gnl|rn3|chr18 (29357725-29358036) | |
| 318-456, gnl|bosTau2|chr7 (30555900-30556038) | |
| 318-456, gnl|canFam2|chr2 (38618877-38618980) | |
| 318-456, gnl|dasNov1|scaffold_21651 (1807-1705) | |
| 318-456, gnl|echTel1|scaffold_119147 (1278-1380) | |
| 318-456, gnl|galGal2|chr13 (275235-275154) | |
| 318-456, gnl|hg17|chr5 (139935190-139935292) | |
| 318-456, gnl|Hg17|chr5 (139935345-139935207) | |
| 318-456, gnl|loxAfr1|scaffold_34638 (29536-29434) | |
| 318-456, gnl|mm7|chr18 (37067620-37067722) | |
| 318-456, gnl|Mm7|chr18 (37067775-37067637) | |
| 318-456, gnl|monDom2|scaffold_6 (68187516-68187410) | |
| 318-456, gnl|oryCun1|scaffold_206493 (20944-20842) | |
| 318-456, gnl|panTro1|chr4 (146553151-146553252) | |
| 318-456, gnl|rheMac2|chr6 (136990928-136991030) | |
| 318-456, gnl|rn3|chr18 (29355415-29355516) | |
| 459-663, gnl|bosTau2|chr7 (30557106-30557310) | |
| 459-663, gnl|Hg17|chr5 (139933794-139933590) | |
| 459-663, gnl|Mm7|chr18 (37065436-37065232) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-201, gnl|bosTau2|chr7 (30551984-30552188) | |
| 6-201, gnl|canFam2|chr2 (38623930-38624241) | |
| 6-201, gnl|echTel1|scaffold_126360 (1366-1060) | |
| 6-201, gnl|hg17|chr5 (139951697-139952008) | |
| 6-201, gnl|Hg17|chr5 (139951990-139951792) | |
| 6-201, gnl|mm7|chr18 (37070803-37071113) | |
| 6-201, gnl|Mm7|chr18 (37071088-37070884) | |
| 6-201, gnl|oryCun1|scaffold_206493 (14834-14575) | |
| 6-201, gnl|panTro1|chr4 (146569654-146569965) | |
| 6-201, gnl|rheMac2|chr6 (137006887-137007199) | |
| 6-201, gnl|rn3|chr18 (29357725-29358036) | |
| 318-456, gnl|bosTau2|chr7 (30555900-30556038) | |
| 318-456, gnl|canFam2|chr2 (38618877-38618980) | |
| 318-456, gnl|dasNov1|scaffold_21651 (1807-1705) | |
| 318-456, gnl|echTel1|scaffold_119147 (1278-1380) | |
| 318-456, gnl|galGal2|chr13 (275235-275154) | |
| 318-456, gnl|hg17|chr5 (139935190-139935292) | |
| 318-456, gnl|Hg17|chr5 (139935345-139935207) | |
| 318-456, gnl|loxAfr1|scaffold_34638 (29536-29434) | |
| 318-456, gnl|mm7|chr18 (37067620-37067722) | |
| 318-456, gnl|Mm7|chr18 (37067775-37067637) | |
| 318-456, gnl|monDom2|scaffold_6 (68187516-68187410) | |
| 318-456, gnl|oryCun1|scaffold_206493 (20944-20842) | |
| 318-456, gnl|panTro1|chr4 (146553151-146553252) | |
| 318-456, gnl|rheMac2|chr6 (136990928-136991030) | |
| 318-456, gnl|rn3|chr18 (29355415-29355516) | |
| 459-663, gnl|bosTau2|chr7 (30557106-30557310) | |
| 459-663, gnl|Hg17|chr5 (139933794-139933590) | |
| 459-663, gnl|Mm7|chr18 (37065436-37065232) |