Non-Coding RNA Search

Ss1.1-Liv1-LVRM10119C02.5

Sequence:


               
               ATTCAAAAATAACAAAGTTCTTGTAAGGTAAATAATGTATTTAGCATGAAGCATGAATTA
TTTTCATATAAATATAGAAAATAGAGAAAAGGCTATGCCTCTAATTTTTAAGCCCTTAGG
CTTAGAGGTTCTTTTGGTTTTCTTCCTTTTTCTTTCTTTTTTTTTTTTTTAATTTCATTG
AAATTTTCTTTCGTTGGTTTTTTTTGTTTTTTTGTTTTTTTTTTCCTTTTTTCCGATTAT
TTTGTTTTGGTTTTTTGAAGCAGGTGTTTAAGGTTTAACCTTCTTCAGGGACAAATTCTG
ACTGTTGGGGAGCTTACTCTGCAATACAAAAAATATCTTCATGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAAAAATAACAAAGTTCTTGTAAGGTAAATAATGTATTTAGCATGAAGCATGAATTA
TTTTCATATAAATATAGAAAATAGAGAAAAGGCTATGCCTCTAATTTTTAAGCCCTTAGG
CTTAGAGGTTCTTTTGGTTTTCTTCCTTTTTCTTTCTTTTTTTTTTTTTTAATTTCATTG
AAATTTTCTTTCGTTGGTTTTTTTTGTTTTTTTGTTTTTTTTTTCCTTTTTTCCGATTAT
TTTGTTTTGGTTTTTTGAAGCAGGTGTTTAAGGTTTAACCTTCTTCAGGGACAAATTCTG
ACTGTTGGGGAGCTTACTCTGCAATACAAAAAATATCTTCATGCTCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-160, + strand, RNAz p=0.932699

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, + strand, RNAz p=0.932699

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005197, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005197, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-348, gnl|bosTau2|chr10 (68418147-68417806)
               

               
               1-348, gnl|Hg17|chr14 (88697199-88696865)
               

               
               1-348, gnl|Mm7|chr12 (96689828-96689517)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-348, gnl|bosTau2|chr10 (68418147-68417806)
               

               
               1-348, gnl|Hg17|chr14 (88697199-88696865)
               

               
               1-348, gnl|Mm7|chr12 (96689828-96689517)

	1-348, gnl\|bosTau2\|chr10 (68418147-68417806)
	1-348, gnl\|Hg17\|chr14 (88697199-88696865)
	1-348, gnl\|Mm7\|chr12 (96689828-96689517)