Non-Coding RNA Search

Ss1.1-Liv1-LVRM10127A03.5

Sequence:


               
               TGGCCCGTAGGGACGAAGAAGACAGCAACCAGAAGAGGCCGTTGAGCGCGGCCGCCGTGA
CCAGGCTGTGCAGCGGCTTCTCCCACACCAGCAGCCGCTGCGCTGCCGCCAGCACCGCCT
CCCAGCCGCGGAGCCGCAGCCACAGCGTCGTGGCCAGGCGTCCCACCGCCTCGGCAGTGG
CTGCCTCCTCCTCCGCCTCGCCGGTGGCCTCACCCATTCCTAAGCTCAGGCCCAGGCCCA
GGCTCAGGCCCAGCCCTGGGCTCCCACCCGCGCCGGTGTTACCACCGCCACCACCACTAG
CCATAGCCCCGCCGCAGCCGCCGCCCGAGCCCGCGAGGAGCCAGGGCTGCGCGGCCGCCG
CCGGGGGCGCGTCAGGCGGAAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCCGTAGGGACGAAGAAGACAGCAACCAGAAGAGGCCGTTGAGCGCGGCCGCCGTGA
CCAGGCTGTGCAGCGGCTTCTCCCACACCAGCAGCCGCTGCGCTGCCGCCAGCACCGCCT
CCCAGCCGCGGAGCCGCAGCCACAGCGTCGTGGCCAGGCGTCCCACCGCCTCGGCAGTGG
CTGCCTCCTCCTCCGCCTCGCCGGTGGCCTCACCCATTCCTAAGCTCAGGCCCAGGCCCA
GGCTCAGGCCCAGCCCTGGGCTCCCACCCGCGCCGGTGTTACCACCGCCACCACCACTAG
CCATAGCCCCGCCGCAGCCGCCGCCCGAGCCCGCGAGGAGCCAGGGCTGCGCGGCCGCCG
CCGGGGGCGCGTCAGGCGGAAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-301, - strand, RNAz p=0.992474

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-301, - strand, RNAz p=0.992474

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               238-332, - strand, RNAmicro p=0.930969

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               238-332, - strand, RNAmicro p=0.930969

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-382, gnl|bosTau2|chr2 (65121025-65120677)
               

               
               28-382, gnl|Hg17|chr2 (219868862-219868502)
               

               
               28-382, gnl|Mm7|chr1 (75366812-75366467)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-382, gnl|bosTau2|chr2 (65121025-65120677)
               

               
               28-382, gnl|Hg17|chr2 (219868862-219868502)
               

               
               28-382, gnl|Mm7|chr1 (75366812-75366467)

	28-382, gnl\|bosTau2\|chr2 (65121025-65120677)
	28-382, gnl\|Hg17\|chr2 (219868862-219868502)
	28-382, gnl\|Mm7\|chr1 (75366812-75366467)